RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	FAM83C	Q9BQN1	747 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	DBNDD2	Q9BQY9	259 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	ATXN3L	Q9H3M9	355 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	C7orf69	Q9H7B7	122 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	CBX8	Q9HC52	389 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	WWC3	Q9ULE0	1092 aa		4.93	□□□□□ -1.62
CD44-238	ENST00000534296	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	4.92	□□□□□ -1.62
CD44-238	ENST00000534296	FAM95C	A0A1B0GW59	222 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	AOC2	O75106	756 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	RAB6A	P20340	208 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	ARNT	P27540	789 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	GRIK1	P39086	918 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	TMCO4	Q5TGY1	634 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	RNF43	Q68DV7	783 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	TRIM42	Q8IWZ5	723 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	ANKRD24	Q8TF21	1146 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	SETDB2	Q96T68	719 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	DUSP9	Q99956	384 aa	Known RBP	4.92	□□□□□ -1.62
CD44-238	ENST00000534296	OSBPL7	Q9BZF2	842 aa		4.92	□□□□□ -1.62
CD44-238	ENST00000534296	ZC3H12C	Q9C0D7	883 aa	Known RBP	4.92	□□□□□ -1.62
CD44-238	ENST00000534296	HMX2	A2RU54	273 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	DLGAP3	O95886	979 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	DRD2	P14416	443 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	ASPA	P45381	313 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	ID3	Q02535	119 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	NFKBIB	Q15653	356 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	CPSF6	Q16630	551 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
CD44-238	ENST00000534296	SGO2	Q562F6	1265 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	SCARA3	Q6AZY7	606 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	SV2B	Q7L1I2	683 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	NPAS4	Q8IUM7	802 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	C2CD4A	Q8NCU7	369 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-238	ENST00000534296	C3orf58	Q8NDZ4	430 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	NECAB3	Q96P71	396 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-238	ENST00000534296	METTL22	Q9BUU2	404 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-238	ENST00000534296	PICK1	Q9NRD5	415 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	ATG3	Q9NT62	314 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	RNF112	Q9ULX5	631 aa		4.91	□□□□□ -1.62
CD44-238	ENST00000534296	RLBP1	P12271	317 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	CYP27A1	Q02318	531 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	CCDC85B	Q15834	202 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-238	ENST00000534296	KIF4B	Q2VIQ3	1234 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	ZNF326	Q5BKZ1	582 aa	Known RBP	4.9	□□□□□ -1.63
CD44-238	ENST00000534296	MAP1S	Q66K74	1059 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-238	ENST00000534296	LLGL2	Q6P1M3	1020 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-238	ENST00000534296	FBLIM1	Q8WUP2	373 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	WDR18	Q9BV38	432 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	CCDC86	Q9H6F5	360 aa	Known RBP	4.9	□□□□□ -1.63
CD44-238	ENST00000534296	PARP2	Q9UGN5	583 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	CYP8B1	Q9UNU6	501 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	ACTL7B	Q9Y614	415 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	AK5	Q9Y6K8	562 aa		4.9	□□□□□ -1.63
CD44-238	ENST00000534296	SORBS3	O60504	671 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	FBXO24	O75426	580 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	TRIM37	O94972	964 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	ECEL1	O95672	775 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	CTSB	P07858	339 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	LIG1	P18858	919 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	LRP8	Q14114	963 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	INTS5	Q6P9B9	1019 aa	Known RBP	4.89	□□□□□ -1.63
CD44-238	ENST00000534296	EZH1	Q92800	747 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-238	ENST00000534296	TBC1D32	Q96NH3	1257 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	OSBPL1A	Q9BXW6	950 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	SSU72	Q9NP77	194 aa	Known RBP	4.89	□□□□□ -1.63
CD44-238	ENST00000534296	DAGLA	Q9Y4D2	1042 aa		4.89	□□□□□ -1.63
CD44-238	ENST00000534296	ENC1	O14682	589 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	COBL	O75128	1261 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	DAB2	P98082	770 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	DUSP27	Q5VZP5	1158 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	PCNX4	Q63HM2	1172 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	TMC4	Q7Z404	712 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	NBPF11	Q86T75	865 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	FBXL6	Q8N531	539 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	MFSD14A	Q96MC6	490 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	BCL2L13	Q9BXK5	485 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	FAM105A	Q9NUU6	356 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	CRIM1	Q9NZV1	1036 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	VTI1B	Q9UEU0	232 aa		4.88	□□□□□ -1.63
CD44-238	ENST00000534296	WDR64	B1ANS9	1081 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	TMPRSS2	O15393	492 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	ZNF862	O60290	1169 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	RNGTT	O60942	597 aa	Known RBP	4.87	□□□□□ -1.63
CD44-238	ENST00000534296	NFIC	P08651	508 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	ITGB7	P26010	798 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	TTBK2	Q6IQ55	1244 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	CDPF1	Q6NVV7	123 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	FBXO33	Q7Z6M2	555 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	PDZD3	Q86UT5	571 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	SMYD4	Q8IYR2	804 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-238	ENST00000534296	SHKBP1	Q8TBC3	707 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	GPBAR1	Q8TDU6	330 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	ELMO3	Q96BJ8	720 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	CRELD1	Q96HD1	420 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	SEMA6C	Q9H3T2	930 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	ACSS3	Q9H6R3	686 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	ZFP64	Q9NPA5	681 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	PCMTD2	Q9NV79	361 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	LEMD3	Q9Y2U8	911 aa		4.87	□□□□□ -1.63
CD44-238	ENST00000534296	CELA3A	P09093	270 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms