RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 PRKG1Q13976 671 aa16.29■□□□□ 0.2
VPS28-210ENST00000529182 NBPF12Q5TAG4 269 aaPredicted RBP16.29■□□□□ 0.2
VPS28-210ENST00000529182 PAXIP1Q6ZW49 1069 aaPredicted RBP16.29■□□□□ 0.2
VPS28-210ENST00000529182 SLF2Q8IX21 1173 aa16.29■□□□□ 0.2
VPS28-210ENST00000529182 C2orf69Q8N8R5 385 aa16.29■□□□□ 0.2
VPS28-210ENST00000529182 FAM163AQ96GL9 167 aaPredicted RBP16.29■□□□□ 0.2
VPS28-210ENST00000529182 TMEM39BQ9GZU3 492 aa16.29■□□□□ 0.2
VPS28-210ENST00000529182 TMOD2Q9NZR1 351 aa16.29■□□□□ 0.2
VPS28-210ENST00000529182 PPP2R3BQ9Y5P8 575 aa16.29■□□□□ 0.2
VPS28-210ENST00000529182 SSC5DA1L4H1 1573 aa16.29■□□□□ 0.2
VPS28-210ENST00000529182 MYO5AQ9Y4I1 1855 aaKnown RBP16.29■□□□□ 0.2
VPS28-210ENST00000529182 GOLIM4O00461 696 aa16.28■□□□□ 0.2
VPS28-210ENST00000529182 HUNKP57058 714 aa16.28■□□□□ 0.2
VPS28-210ENST00000529182 GSTO1P78417 241 aa16.28■□□□□ 0.2
VPS28-210ENST00000529182 DEFB115Q30KQ5 88 aa16.28■□□□□ 0.2
VPS28-210ENST00000529182 B4GALNT3Q6L9W6 998 aa16.28■□□□□ 0.2
VPS28-210ENST00000529182 NAA16Q6N069 864 aaPredicted RBP16.28■□□□□ 0.2
VPS28-210ENST00000529182 ADGRA1Q86SQ6 560 aa16.28■□□□□ 0.2
VPS28-210ENST00000529182 ECHDC1Q9NTX5 307 aa16.28■□□□□ 0.2
VPS28-210ENST00000529182 GPR75-ASB3A0A0A6YYF3 556 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 LDHCP07864 332 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 NF2P35240 595 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 TNNI2P48788 182 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 VEGFBP49765 207 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 TCP10Q12799 353 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 GRM1Q13255 1194 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 TTLL12Q14166 644 aaPredicted RBP16.27■□□□□ 0.2
VPS28-210ENST00000529182 CYP4F22Q6NT55 531 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 SMC5Q8IY18 1101 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 MAGEB6Q8N7X4 407 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 TEPSINQ96N21 525 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 PAG1Q9NWQ8 432 aa16.27■□□□□ 0.2
VPS28-210ENST00000529182 MAST2Q6P0Q8 1798 aa16.26■□□□□ 0.19
VPS28-210ENST00000529182 UBE2Q2LH0YL09 131 aa16.26■□□□□ 0.19
VPS28-210ENST00000529182 CYP7A1P22680 504 aa16.26■□□□□ 0.19
VPS28-210ENST00000529182 RHBDL3P58872 404 aa16.26■□□□□ 0.19
VPS28-210ENST00000529182 HAUS7Q99871 368 aa16.26■□□□□ 0.19
VPS28-210ENST00000529182 AATFQ9NY61 560 aaKnown RBP eCLIP16.26■□□□□ 0.196e-6■■■■□ 25.6
VPS28-210ENST00000529182 ZBTB47Q9UFB7 747 aaPredicted RBP16.26■□□□□ 0.19
VPS28-210ENST00000529182 FAM198AQ9UFP1 575 aa16.26■□□□□ 0.19
VPS28-210ENST00000529182 MAP3K12Q12852 859 aa16.25■□□□□ 0.19
VPS28-210ENST00000529182 TTF1Q15361 905 aaPredicted RBP16.25■□□□□ 0.19
VPS28-210ENST00000529182 FKBP1CQ5VVH2 108 aa16.25■□□□□ 0.19
VPS28-210ENST00000529182 FAM83AQ86UY5 434 aa16.25■□□□□ 0.19
VPS28-210ENST00000529182 ZFPM1Q8IX07 1006 aa16.25■□□□□ 0.19
VPS28-210ENST00000529182 GPATCH3Q96I76 525 aa16.25■□□□□ 0.19
VPS28-210ENST00000529182 DDX4Q9NQI0 724 aaKnown RBP16.25■□□□□ 0.19
VPS28-210ENST00000529182 PAPPA2Q9BXP8 1791 aa16.25■□□□□ 0.19
VPS28-210ENST00000529182 RFX7Q2KHR2 1363 aa16.25■□□□□ 0.19
VPS28-210ENST00000529182 DOCK2Q92608 1830 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 SALL3Q9BXA9 1300 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 WDHD1O75717 1129 aaPredicted RBP16.24■□□□□ 0.19
VPS28-210ENST00000529182 MAP4K4O95819 1239 aaPredicted RBP16.24■□□□□ 0.19
VPS28-210ENST00000529182 RGS3P49796 1198 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 DYNLL1P63167 89 aaKnown RBP16.24■□□□□ 0.19
VPS28-210ENST00000529182 FKBP1BP68106 108 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 PICALMQ13492 652 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 SUPT20HL1Q3ZLR7 823 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 MIGA1Q8NAN2 632 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 SH3RF3Q8TEJ3 882 aaPredicted RBP16.24■□□□□ 0.19
VPS28-210ENST00000529182 FAM151AQ8WW52 585 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 CAPNS2Q96L46 248 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 IDI2Q9BXS1 227 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 LNPKQ9C0E8 428 aa16.24■□□□□ 0.19
VPS28-210ENST00000529182 ANGEL1Q9UNK9 670 aaKnown RBP16.24■□□□□ 0.19
VPS28-210ENST00000529182 WDR33Q9C0J8 1336 aaKnown RBP16.23■□□□□ 0.19
VPS28-210ENST00000529182 CHGBP05060 677 aa16.23■□□□□ 0.19
VPS28-210ENST00000529182 PDE6AP16499 860 aa16.23■□□□□ 0.19
VPS28-210ENST00000529182 MX1P20591 662 aa16.23■□□□□ 0.19
VPS28-210ENST00000529182 SLFNL1Q499Z3 407 aa16.23■□□□□ 0.19
VPS28-210ENST00000529182 SLC9C2Q5TAH2 1124 aa16.23■□□□□ 0.19
VPS28-210ENST00000529182 PI4K2BQ8TCG2 481 aa16.23■□□□□ 0.19
VPS28-210ENST00000529182 TTC41PQ6P2S7 1318 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 PPP1R12BO60237 982 aaPredicted RBP16.22■□□□□ 0.19
VPS28-210ENST00000529182 IGSF3O75054 1194 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 AOC2O75106 756 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 USP2O75604 605 aaPredicted RBP16.22■□□□□ 0.19
VPS28-210ENST00000529182 BAG3O95817 575 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 ZNF157P51786 506 aaPredicted RBP16.22■□□□□ 0.19
VPS28-210ENST00000529182 RGMBQ6NW40 437 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 ARMC9Q7Z3E5 817 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 CHD1LQ86WJ1 897 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 TEX11Q8IYF3 940 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 HHIPL1Q96JK4 782 aa16.22■□□□□ 0.19
VPS28-210ENST00000529182 NOL10Q9BSC4 688 aaKnown RBP16.22■□□□□ 0.19
VPS28-210ENST00000529182 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.22■□□□□ 0.19
VPS28-210ENST00000529182 ZNF532Q9HCE3 1301 aa16.21■□□□□ 0.19
VPS28-210ENST00000529182 ENTPD3O75355 529 aa16.21■□□□□ 0.19
VPS28-210ENST00000529182 PPP4CP60510 307 aa16.21■□□□□ 0.19
VPS28-210ENST00000529182 NUCB1Q02818 461 aa16.21■□□□□ 0.19
VPS28-210ENST00000529182 SH3BP5LQ7L8J4 393 aa16.21■□□□□ 0.19
VPS28-210ENST00000529182 RPAP1Q9BWH6 1393 aaPredicted RBP16.21■□□□□ 0.19
VPS28-210ENST00000529182 TCRBV5S4A2TA0A5A2 114 aa16.2■□□□□ 0.18
VPS28-210ENST00000529182 DDTLA6NHG4 134 aaPredicted RBP16.2■□□□□ 0.18
VPS28-210ENST00000529182 FAM155AB1AL88 458 aaPredicted RBP16.2■□□□□ 0.18
VPS28-210ENST00000529182 ERC2O15083 957 aa16.2■□□□□ 0.18
VPS28-210ENST00000529182 SLURP2P0DP57 97 aa16.2■□□□□ 0.18
VPS28-210ENST00000529182 ECE1P42892 770 aa16.2■□□□□ 0.18
VPS28-210ENST00000529182 MAP3K11Q16584 847 aa16.2■□□□□ 0.18
VPS28-210ENST00000529182 LDLRAD1Q5T700 205 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms