RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 UBE3CQ15386 1083 aa16.54■□□□□ 0.24
CD44-224ENST00000526669 LRRFIP1Q32MZ4 808 aaKnown RBP16.54■□□□□ 0.24
CD44-224ENST00000526669 EAPPQ56P03 285 aaPredicted RBP16.54■□□□□ 0.24
CD44-224ENST00000526669 ZMYM1Q5SVZ6 1142 aa16.54■□□□□ 0.24
CD44-224ENST00000526669 CWC27Q6UX04 472 aaKnown RBP16.54■□□□□ 0.24
CD44-224ENST00000526669 CCDC129Q6ZRS4 1044 aa16.54■□□□□ 0.24
CD44-224ENST00000526669 APPBP2Q92624 585 aa16.54■□□□□ 0.24
CD44-224ENST00000526669 OSBP2Q969R2 916 aa16.54■□□□□ 0.24
CD44-224ENST00000526669 PRMT6Q96LA8 375 aaPredicted RBP16.54■□□□□ 0.24
CD44-224ENST00000526669 NOL10Q9BSC4 688 aaKnown RBP16.54■□□□□ 0.24
CD44-224ENST00000526669 TAF1DQ9H5J8 278 aaPredicted RBP16.54■□□□□ 0.24
CD44-224ENST00000526669 TDRD3Q9H7E2 651 aaKnown RBP16.54■□□□□ 0.24
CD44-224ENST00000526669 MAGEB6P1A0A0J9YX57 407 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 IQCA1LA6NCM1 817 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 WNT10BO00744 389 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 CHMLP26374 656 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 HIRAP54198 1017 aaPredicted RBP16.53■□□□□ 0.24
CD44-224ENST00000526669 APOBEC3HQ6NTF7 200 aaKnown RBP16.53■□□□□ 0.24
CD44-224ENST00000526669 LCORLQ8N3X6 602 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 SH3RF3Q8TEJ3 882 aaPredicted RBP16.53■□□□□ 0.24
CD44-224ENST00000526669 ZBED3Q96IU2 234 aaPredicted RBP16.53■□□□□ 0.24
CD44-224ENST00000526669 ZDHHC15Q96MV8 337 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 ARMT1Q9H993 441 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 SCAF8Q9UPN6 1271 aaKnown RBP16.53■□□□□ 0.24
CD44-224ENST00000526669 LAMA4Q16363 1823 aa16.53■□□□□ 0.24
CD44-224ENST00000526669 TRPM7Q96QT4 1865 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 SIPA1L1O43166 1804 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 GPR75-ASB3A0A0A6YYF3 556 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 CDC45O75419 566 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 CACNB3P54284 484 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 CDC42EP5Q6NZY7 148 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 MTMR14Q8NCE2 650 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 FAM163AQ96GL9 167 aaPredicted RBP16.52■□□□□ 0.24
CD44-224ENST00000526669 MRIQ9BWK5 157 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 VEZTQ9HBM0 779 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 USP40Q9NVE5 1235 aa16.52■□□□□ 0.24
CD44-224ENST00000526669 HIP1O00291 1037 aa16.51■□□□□ 0.23
CD44-224ENST00000526669 POTEIP0CG38 1075 aa16.51■□□□□ 0.23
CD44-224ENST00000526669 POTEJP0CG39 1038 aa16.51■□□□□ 0.23
CD44-224ENST00000526669 VEGFAP15692 232 aaPredicted RBP16.51■□□□□ 0.23
CD44-224ENST00000526669 TEX11Q8IYF3 940 aa16.51■□□□□ 0.23
CD44-224ENST00000526669 AIDAQ96BJ3 306 aa16.51■□□□□ 0.23
CD44-224ENST00000526669 RIOK1Q9BRS2 568 aaKnown RBP16.51■□□□□ 0.23
CD44-224ENST00000526669 IL25Q9H293 177 aa16.51■□□□□ 0.23
CD44-224ENST00000526669 GPAA1O43292 621 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 IGSF3O75054 1194 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 BAG3O95817 575 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 MMP14P50281 582 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 RHBDL3P58872 404 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 ZNF589Q86UQ0 364 aaPredicted RBP16.5■□□□□ 0.23
CD44-224ENST00000526669 GPBP1L1Q9HC44 474 aaPredicted RBP16.5■□□□□ 0.23
CD44-224ENST00000526669 HELLSQ9NRZ9 838 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 GGA3Q9NZ52 723 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 ZNF70Q9UC06 446 aaPredicted RBP16.5■□□□□ 0.23
CD44-224ENST00000526669 CLEC11AQ9Y240 323 aa16.5■□□□□ 0.23
CD44-224ENST00000526669 TCP10L2B9ZVM9 353 aa16.49■□□□□ 0.23
CD44-224ENST00000526669 PRKAB2O43741 272 aa16.49■□□□□ 0.23
CD44-224ENST00000526669 PPP4CP60510 307 aa16.49■□□□□ 0.23
CD44-224ENST00000526669 PICALMQ13492 652 aa16.49■□□□□ 0.23
CD44-224ENST00000526669 SPDYE2Q495Y8 402 aa16.49■□□□□ 0.23
CD44-224ENST00000526669 MCMDC2Q4G0Z9 681 aa16.49■□□□□ 0.23
CD44-224ENST00000526669 ANGEL2Q5VTE6 544 aaKnown RBP16.49■□□□□ 0.23
CD44-224ENST00000526669 USP50Q70EL3 339 aaPredicted RBP16.49■□□□□ 0.23
CD44-224ENST00000526669 ATAD5Q96QE3 1844 aa16.48■□□□□ 0.23
CD44-224ENST00000526669 MYO1BO43795 1136 aa16.48■□□□□ 0.23
CD44-224ENST00000526669 NFIAQ12857 509 aa16.48■□□□□ 0.23
CD44-224ENST00000526669 TMED8Q6PL24 325 aaPredicted RBP16.48■□□□□ 0.23
CD44-224ENST00000526669 TGFBRAP1Q8WUH2 860 aa16.48■□□□□ 0.23
CD44-224ENST00000526669 SDR42E1Q8WUS8 393 aa16.48■□□□□ 0.23
CD44-224ENST00000526669 TMOD2Q9NZR1 351 aa16.48■□□□□ 0.23
CD44-224ENST00000526669 SLC4A4Q9Y6R1 1079 aa16.48■□□□□ 0.23
CD44-224ENST00000526669 CCDC171Q6TFL3 1326 aa16.47■□□□□ 0.23
CD44-224ENST00000526669 PLCG2P16885 1265 aa16.47■□□□□ 0.23
CD44-224ENST00000526669 USP5P45974 858 aa16.47■□□□□ 0.23
CD44-224ENST00000526669 MAPKAPK5Q8IW41 473 aa16.47■□□□□ 0.23
CD44-224ENST00000526669 STRBPQ96SI9 672 aaKnown RBP16.47■□□□□ 0.23
CD44-224ENST00000526669 ESYT1Q9BSJ8 1104 aa16.47■□□□□ 0.23
CD44-224ENST00000526669 CRNKL1Q9BZJ0 848 aaKnown RBP16.47■□□□□ 0.23
CD44-224ENST00000526669 DDX4Q9NQI0 724 aaKnown RBP16.47■□□□□ 0.23
CD44-224ENST00000526669 WDHD1O75717 1129 aaPredicted RBP16.46■□□□□ 0.23
CD44-224ENST00000526669 TCP10Q12799 353 aa16.46■□□□□ 0.23
CD44-224ENST00000526669 SLC4A8Q2Y0W8 1093 aa16.46■□□□□ 0.23
CD44-224ENST00000526669 VPS53Q5VIR6 699 aa16.46■□□□□ 0.23
CD44-224ENST00000526669 CASC1Q6TDU7 716 aa16.46■□□□□ 0.23
CD44-224ENST00000526669 PNMA8AQ86V59 439 aaPredicted RBP16.46■□□□□ 0.23
CD44-224ENST00000526669 TICAM2Q86XR7 235 aa16.46■□□□□ 0.23
CD44-224ENST00000526669 RUFY2Q8WXA3 655 aa16.46■□□□□ 0.23
CD44-224ENST00000526669 FAM198AQ9UFP1 575 aa16.46■□□□□ 0.23
CD44-224ENST00000526669 RAD50Q92878 1312 aa16.45■□□□□ 0.22
CD44-224ENST00000526669 SGSM2O43147 1006 aa16.45■□□□□ 0.22
CD44-224ENST00000526669 DLK2Q6UY11 383 aa16.45■□□□□ 0.22
CD44-224ENST00000526669 ZFPM1Q8IX07 1006 aa16.45■□□□□ 0.22
CD44-224ENST00000526669 ZNF784Q8NCA9 323 aaPredicted RBP16.45■□□□□ 0.22
CD44-224ENST00000526669 SAP30BPQ9UHR5 308 aaKnown RBP16.45■□□□□ 0.22
CD44-224ENST00000526669 OTOFQ9HC10 1997 aa16.45■□□□□ 0.22
CD44-224ENST00000526669 FLT1P17948 1338 aa16.45■□□□□ 0.22
CD44-224ENST00000526669 CNTNAP1P78357 1384 aa16.44■□□□□ 0.22
CD44-224ENST00000526669 ADM5C9JUS6 153 aa16.44■□□□□ 0.22
CD44-224ENST00000526669 KIF3CO14782 793 aa16.44■□□□□ 0.22
CD44-224ENST00000526669 APPP05067 770 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms