RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 YIPF2Q9BWQ6 316 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 CCDC86Q9H6F5 360 aaKnown RBP6.63□□□□□ -1.35
CD44-219ENST00000525685 ACSS3Q9H6R3 686 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 FAM105AQ9NUU6 356 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 PRKAG2Q9UGJ0 569 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 AP4E1Q9UPM8 1137 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.62□□□□□ -1.35
CD44-219ENST00000525685 ADMP35318 185 aa6.62□□□□□ -1.35
CD44-219ENST00000525685 FBF1Q8TES7 1133 aa6.62□□□□□ -1.35
CD44-219ENST00000525685 GATA6Q92908 595 aa6.62□□□□□ -1.35
CD44-219ENST00000525685 WDR89Q96FK6 387 aaPredicted RBP6.62□□□□□ -1.35
CD44-219ENST00000525685 SEMA6CQ9H3T2 930 aa6.62□□□□□ -1.35
CD44-219ENST00000525685 TMEM39AQ9NV64 488 aa6.62□□□□□ -1.35
CD44-219ENST00000525685 PIM2Q9P1W9 311 aa6.62□□□□□ -1.35
CD44-219ENST00000525685 PPP1R9AQ9ULJ8 1098 aa6.62□□□□□ -1.35
CD44-219ENST00000525685 NFICP08651 508 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 GSTP1P09211 210 aaKnown RBP6.61□□□□□ -1.35
CD44-219ENST00000525685 LIG1P18858 919 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 RAB6AP20340 208 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 HOXA10P31260 410 aaPredicted RBP6.61□□□□□ -1.35
CD44-219ENST00000525685 ASPAP45381 313 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 MAPK8P45983 427 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 PPP2R3AQ06190 1150 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 CPSF6Q16630 551 aaKnown RBP eCLIP6.61□□□□□ -1.35
CD44-219ENST00000525685 ZAR1Q86SH2 424 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 PDZD3Q86UT5 571 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 DTX1Q86Y01 620 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 C3orf58Q8NDZ4 430 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 GIMAP7Q8NHV1 300 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 SETDB2Q96T68 719 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 ZC3H12CQ9C0D7 883 aaKnown RBP6.61□□□□□ -1.35
CD44-219ENST00000525685 ATG3Q9NT62 314 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 GPN3Q9UHW5 284 aaPredicted RBP6.61□□□□□ -1.35
CD44-219ENST00000525685 AKAP2Q9Y2D5 859 aa6.61□□□□□ -1.35
CD44-219ENST00000525685 ANKRD33BA6NCL7 494 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 TMPRSS2O15393 492 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 ZNF862O60290 1169 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 ADAMTS4O75173 837 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 MAP7Q14244 749 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 STK35Q8TDR2 534 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 TBC1D32Q96NH3 1257 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 OSBPL1AQ9BXW6 950 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 KRTAP4-8Q9BYQ9 185 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 KRT82Q9NSB4 513 aa6.6□□□□□ -1.35
CD44-219ENST00000525685 FOSL1P15407 271 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 KIF4BQ2VIQ3 1234 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 SEZ6L2Q6UXD5 910 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 OSBPL7Q9BZF2 842 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 SRCIN1Q9C0H9 1055 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 CRIM1Q9NZV1 1036 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 WWC3Q9ULE0 1092 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 LEMD3Q9Y2U8 911 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 PCDHGC5Q9Y5F6 944 aa6.59□□□□□ -1.35
CD44-219ENST00000525685 FAM170BA6NMN3 283 aa6.58□□□□□ -1.36
CD44-219ENST00000525685 DYNC1LI2O43237 492 aaPredicted RBP6.58□□□□□ -1.36
CD44-219ENST00000525685 ERCC3P19447 782 aa6.58□□□□□ -1.36
CD44-219ENST00000525685 MSMPQ1L6U9 139 aa6.58□□□□□ -1.36
CD44-219ENST00000525685 ALG1LQ6GMV1 187 aa6.58□□□□□ -1.36
CD44-219ENST00000525685 SULF2Q8IWU5 870 aa6.58□□□□□ -1.36
CD44-219ENST00000525685 PSMG3-AS1Q96PY0 264 aa6.58□□□□□ -1.36
CD44-219ENST00000525685 METTL22Q9BUU2 404 aaPredicted RBP6.58□□□□□ -1.36
CD44-219ENST00000525685 P4HBP07237 508 aaKnown RBP6.57□□□□□ -1.36
CD44-219ENST00000525685 SLFN14P0C7P3 912 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 NME2P22392 152 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 ARNTP27540 789 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 GSTT1P30711 240 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 ID3Q02535 119 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 KCNB2Q92953 911 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 NECAB3Q96P71 396 aaPredicted RBP6.57□□□□□ -1.36
CD44-219ENST00000525685 FANCD2OSQ96PS1 177 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 BCL11AQ9H165 835 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 ATXN3LQ9H3M9 355 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 C1GALT1Q9NS00 363 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 DAGLAQ9Y4D2 1042 aa6.57□□□□□ -1.36
CD44-219ENST00000525685 GIPC1O14908 333 aa6.56□□□□□ -1.36
CD44-219ENST00000525685 GP2P55259 537 aaKnown RBP6.56□□□□□ -1.36
CD44-219ENST00000525685 HNRNPUQ00839 825 aaKnown RBP eCLIP6.56□□□□□ -1.36
CD44-219ENST00000525685 ATP2B2Q01814 1243 aa6.56□□□□□ -1.36
CD44-219ENST00000525685 ZNF252P-AS1Q0IIN9 211 aa6.56□□□□□ -1.36
CD44-219ENST00000525685 DISC1Q9NRI5 854 aa6.56□□□□□ -1.36
CD44-219ENST00000525685 CACNA2D2Q9NY47 1150 aa6.56□□□□□ -1.36
CD44-219ENST00000525685 PPM1HQ9ULR3 514 aa6.56□□□□□ -1.36
CD44-219ENST00000525685 OAS3Q9Y6K5 1087 aaKnown RBP6.56□□□□□ -1.36
CD44-219ENST00000525685 ENC1O14682 589 aa6.55□□□□□ -1.36
CD44-219ENST00000525685 WNT11O96014 354 aa6.55□□□□□ -1.36
CD44-219ENST00000525685 EAPPQ56P03 285 aaPredicted RBP6.55□□□□□ -1.36
CD44-219ENST00000525685 TPTE2Q6XPS3 522 aa6.55□□□□□ -1.36
CD44-219ENST00000525685 ANKRD24Q8TF21 1146 aa6.55□□□□□ -1.36
CD44-219ENST00000525685 CYP26A1O43174 497 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 PAGE1O75459 146 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 CYP27A1Q02318 531 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 TTLL4Q14679 1199 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 ZC3H12AQ5D1E8 599 aaKnown RBP6.54□□□□□ -1.36
CD44-219ENST00000525685 DUSP27Q5VZP5 1158 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 MAP1SQ66K74 1059 aaPredicted RBP6.54□□□□□ -1.36
CD44-219ENST00000525685 ZNF765Q7L2R6 523 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 BCL2L13Q9BXK5 485 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 EMILIN2Q9BXX0 1053 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 CEP44Q9C0F1 390 aa6.54□□□□□ -1.36
CD44-219ENST00000525685 C12orf49Q9H741 205 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms