RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PPP2R3AQ06190 1150 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 ZNF252P-AS1Q0IIN9 211 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 RNF43Q68DV7 783 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 SHISA5Q8N114 240 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 ANKRD24Q8TF21 1146 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 GSX1Q9H4S2 264 aaPredicted RBP7.34□□□□□ -1.23
CD44-217ENST00000525348 RAD18Q9NS91 495 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 FAM105AQ9NUU6 356 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 PPM1HQ9ULR3 514 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 PCDHGC5Q9Y5F6 944 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 TMPRSS2O15393 492 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 BMP6P22004 513 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 NFIAQ12857 509 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 KIF4BQ2VIQ3 1234 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 HP1BP3Q5SSJ5 553 aaPredicted RBP7.33□□□□□ -1.24
CD44-217ENST00000525348 Q8N3U1 123 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 GRIN3AQ8TCU5 1115 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 PARP2Q9UGN5 583 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 AP4E1Q9UPM8 1137 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 AK5Q9Y6K8 562 aa7.33□□□□□ -1.24
CD44-217ENST00000525348 EIF4BP23588 611 aaKnown RBP7.32□□□□□ -1.24
CD44-217ENST00000525348 DYMQ7RTS9 669 aa7.32□□□□□ -1.24
CD44-217ENST00000525348 ZDHHC13Q8IUH4 622 aa7.32□□□□□ -1.24
CD44-217ENST00000525348 EZH1Q92800 747 aaPredicted RBP7.32□□□□□ -1.24
CD44-217ENST00000525348 KCNB2Q92953 911 aa7.32□□□□□ -1.24
CD44-217ENST00000525348 FAM161BQ96MY7 647 aa7.32□□□□□ -1.24
CD44-217ENST00000525348 FRMD6Q96NE9 622 aa7.32□□□□□ -1.24
CD44-217ENST00000525348 KRT82Q9NSB4 513 aa7.32□□□□□ -1.24
CD44-217ENST00000525348 CACNA2D2Q9NY47 1150 aa7.32□□□□□ -1.24
CD44-217ENST00000525348 SYNGAP1Q96PV0 1343 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 RAB6AP20340 208 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 RXRBP28702 533 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 USP11P51784 963 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 MAP1SQ66K74 1059 aaPredicted RBP7.31□□□□□ -1.24
CD44-217ENST00000525348 DBNDD2Q9BQY9 259 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 ACSS3Q9H6R3 686 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 CRIM1Q9NZV1 1036 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 RNF112Q9ULX5 631 aa7.31□□□□□ -1.24
CD44-217ENST00000525348 FAM95CA0A1B0GW59 222 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 TGFB1P01137 390 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 NFICP08651 508 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 ASPAP45381 313 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 DAB2P98082 770 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 HOMEZQ8IX15 550 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 SHKBP1Q8TBC3 707 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 GPBAR1Q8TDU6 330 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 MFSD14AQ96MC6 490 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 CEP44Q9C0F1 390 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 SEMA6CQ9H3T2 930 aa7.3□□□□□ -1.24
CD44-217ENST00000525348 PRR19A6NJB7 356 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 GSC2O15499 205 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 DYNC1LI2O43237 492 aaPredicted RBP7.29□□□□□ -1.24
CD44-217ENST00000525348 CTSHP09668 335 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 ADMP35318 185 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 ID3Q02535 119 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 NFKBIBQ15653 356 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 MEI1Q5TIA1 1274 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 SLC51AQ86UW1 340 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 GATA6Q92908 595 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 FANCD2OSQ96PS1 177 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 CBX8Q9HC52 389 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 DISC1Q9NRI5 854 aa7.29□□□□□ -1.24
CD44-217ENST00000525348 TTF2Q9UNY4 1162 aaKnown RBP7.29□□□□□ -1.24
CD44-217ENST00000525348 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.28□□□□□ -1.24
CD44-217ENST00000525348 MED26O95402 600 aa7.28□□□□□ -1.24
CD44-217ENST00000525348 F13BP05160 661 aa7.28□□□□□ -1.24
CD44-217ENST00000525348 PCNX4Q63HM2 1172 aa7.28□□□□□ -1.24
CD44-217ENST00000525348 SEZ6L2Q6UXD5 910 aa7.28□□□□□ -1.24
CD44-217ENST00000525348 TMC4Q7Z404 712 aa7.28□□□□□ -1.24
CD44-217ENST00000525348 EMILIN2Q9BXX0 1053 aa7.28□□□□□ -1.24
CD44-217ENST00000525348 PRKAG2Q9UGJ0 569 aa7.28□□□□□ -1.24
CD44-217ENST00000525348 SCO2A0A1W2PP80 73 aa7.27□□□□□ -1.25
CD44-217ENST00000525348 PTPN11Q06124 597 aaPredicted RBP7.27□□□□□ -1.25
CD44-217ENST00000525348 PSMD2Q13200 908 aa7.27□□□□□ -1.25
CD44-217ENST00000525348 ZC3H12AQ5D1E8 599 aaKnown RBP7.27□□□□□ -1.25
CD44-217ENST00000525348 ARTNQ5T4W7 220 aa7.27□□□□□ -1.25
CD44-217ENST00000525348 XP32Q5T750 250 aa7.27□□□□□ -1.25
CD44-217ENST00000525348 PAOXQ6QHF9 649 aa7.27□□□□□ -1.25
CD44-217ENST00000525348 SV2BQ7L1I2 683 aa7.27□□□□□ -1.25
CD44-217ENST00000525348 WDR64B1ANS9 1081 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 HYAL3O43820 417 aaPredicted RBP7.26□□□□□ -1.25
CD44-217ENST00000525348 NEFMP07197 916 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 SLFN14P0C7P3 912 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 ERCC3P19447 782 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 FGD1P98174 961 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 LRP8Q14114 963 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 TTLL4Q14679 1199 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 LLGL2Q6P1M3 1020 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 FBXL6Q8N531 539 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 LGR6Q9HBX8 967 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 C1GALT1Q9NS00 363 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 DAGLAQ9Y4D2 1042 aa7.26□□□□□ -1.25
CD44-217ENST00000525348 TRIM37O94972 964 aa7.25□□□□□ -1.25
CD44-217ENST00000525348 SSTR4P31391 388 aa7.25□□□□□ -1.25
CD44-217ENST00000525348 XPCQ01831 940 aaPredicted RBP7.25□□□□□ -1.25
CD44-217ENST00000525348 ZAR1Q86SH2 424 aa7.25□□□□□ -1.25
CD44-217ENST00000525348 GAL3ST3Q96A11 431 aa7.25□□□□□ -1.25
CD44-217ENST00000525348 YIPF2Q9BWQ6 316 aa7.25□□□□□ -1.25
CD44-217ENST00000525348 ATXN3LQ9H3M9 355 aa7.25□□□□□ -1.25
CD44-217ENST00000525348 CSADQ9Y600 493 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms