RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PRMT6Q96LA8 375 aaPredicted RBP18.06■□□□□ 0.48
NUP54-213ENST00000513352 VEZTQ9HBM0 779 aa18.06■□□□□ 0.48
NUP54-213ENST00000513352 AATFQ9NY61 560 aaKnown RBP eCLIP18.06■□□□□ 0.48
NUP54-213ENST00000513352 GGA3Q9NZ52 723 aa18.06■□□□□ 0.48
NUP54-213ENST00000513352 BAG3O95817 575 aa18.05■□□□□ 0.48
NUP54-213ENST00000513352 FAM163AQ96GL9 167 aaPredicted RBP18.05■□□□□ 0.48
NUP54-213ENST00000513352 DIAPH3Q9NSV4 1193 aa18.05■□□□□ 0.48
NUP54-213ENST00000513352 USP40Q9NVE5 1235 aa18.05■□□□□ 0.48
NUP54-213ENST00000513352 MAGEB6P1A0A0J9YX57 407 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 TCRBV5S4A2TA0A5A2 114 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 POTEIP0CG38 1075 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 POTEJP0CG39 1038 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 DYNLL1P63167 89 aaKnown RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 UBE3CQ15386 1083 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 BMP2KLQ5H9B9 411 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 ANGEL2Q5VTE6 544 aaKnown RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 APOBEC3HQ6NTF7 200 aaKnown RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 CDC42EP5Q6NZY7 148 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 TMED8Q6PL24 325 aaPredicted RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 APPBP2Q92624 585 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 DCPSQ96C86 337 aaKnown RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 ZBED3Q96IU2 234 aaPredicted RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 ZNF70Q9UC06 446 aaPredicted RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 POLR2AP24928 1970 aaKnown RBP18.04■□□□□ 0.48
NUP54-213ENST00000513352 RFX7Q2KHR2 1363 aa18.04■□□□□ 0.48
NUP54-213ENST00000513352 GPR75-ASB3A0A0A6YYF3 556 aa18.03■□□□□ 0.48
NUP54-213ENST00000513352 MBD4O95243 580 aa18.03■□□□□ 0.48
NUP54-213ENST00000513352 PLCG2P16885 1265 aa18.03■□□□□ 0.48
NUP54-213ENST00000513352 CACNB3P54284 484 aa18.03■□□□□ 0.48
NUP54-213ENST00000513352 LDHDQ86WU2 507 aa18.03■□□□□ 0.48
NUP54-213ENST00000513352 TEX11Q8IYF3 940 aa18.03■□□□□ 0.48
NUP54-213ENST00000513352 AIDAQ96BJ3 306 aa18.03■□□□□ 0.48
NUP54-213ENST00000513352 TCP10L2B9ZVM9 353 aa18.02■□□□□ 0.48
NUP54-213ENST00000513352 HIP1O00291 1037 aa18.02■□□□□ 0.48
NUP54-213ENST00000513352 KIF3CO14782 793 aa18.02■□□□□ 0.48
NUP54-213ENST00000513352 SPDYE2Q495Y8 402 aa18.02■□□□□ 0.48
NUP54-213ENST00000513352 SH3RF3Q8TEJ3 882 aaPredicted RBP18.02■□□□□ 0.48
NUP54-213ENST00000513352 SCAF8Q9UPN6 1271 aaKnown RBP18.02■□□□□ 0.48
NUP54-213ENST00000513352 NMIQ13287 307 aaPredicted RBP18.01■□□□□ 0.47
NUP54-213ENST00000513352 APOBEC3FQ8IUX4 373 aaKnown RBP18.01■□□□□ 0.47
NUP54-213ENST00000513352 ZC3H15Q8WU90 426 aaKnown RBP18.01■□□□□ 0.47
NUP54-213ENST00000513352 OSBP2Q969R2 916 aa18.01■□□□□ 0.47
NUP54-213ENST00000513352 PUS7LQ9H0K6 701 aaKnown RBP18.01■□□□□ 0.47
NUP54-213ENST00000513352 ARMT1Q9H993 441 aa18.01■□□□□ 0.47
NUP54-213ENST00000513352 M0R2C6 588 aa18■□□□□ 0.47
NUP54-213ENST00000513352 PICALMQ13492 652 aa18■□□□□ 0.47
NUP54-213ENST00000513352 ZMYM1Q5SVZ6 1142 aa18■□□□□ 0.47
NUP54-213ENST00000513352 MAP1SQ66K74 1059 aaPredicted RBP18■□□□□ 0.47
NUP54-213ENST00000513352 CWC27Q6UX04 472 aaKnown RBP18■□□□□ 0.47
NUP54-213ENST00000513352 KRT26Q7Z3Y9 468 aa18■□□□□ 0.47
NUP54-213ENST00000513352 CERS3Q8IU89 383 aa18■□□□□ 0.47
NUP54-213ENST00000513352 SULF1Q8IWU6 871 aa18■□□□□ 0.47
NUP54-213ENST00000513352 PIAS4Q8N2W9 510 aaPredicted RBP18■□□□□ 0.47
NUP54-213ENST00000513352 LCORLQ8N3X6 602 aa18■□□□□ 0.47
NUP54-213ENST00000513352 FAM227BQ96M60 508 aa18■□□□□ 0.47
NUP54-213ENST00000513352 SEC62Q99442 399 aaKnown RBP18■□□□□ 0.47
NUP54-213ENST00000513352 CRNKL1Q9BZJ0 848 aaKnown RBP18■□□□□ 0.47
NUP54-213ENST00000513352 CDK5RAP2Q96SN8 1893 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 A0A0D9SFI3 127 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 USP5P45974 858 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 TNNI2P48788 182 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 RHBDL3P58872 404 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 PPP4CP60510 307 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 TCP10Q12799 353 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 TNFAIP1Q13829 316 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 CHADLQ6NUI6 762 aa17.99■□□□□ 0.47
NUP54-213ENST00000513352 PITPNM2Q9BZ72 1349 aa17.98■□□□□ 0.47
NUP54-213ENST00000513352 GPAA1O43292 621 aa17.98■□□□□ 0.47
NUP54-213ENST00000513352 CASC1Q6TDU7 716 aa17.98■□□□□ 0.47
NUP54-213ENST00000513352 CCDC129Q6ZRS4 1044 aa17.98■□□□□ 0.47
NUP54-213ENST00000513352 TICAM2Q86XR7 235 aa17.98■□□□□ 0.47
NUP54-213ENST00000513352 TGFBRAP1Q8WUH2 860 aa17.98■□□□□ 0.47
NUP54-213ENST00000513352 RIOK1Q9BRS2 568 aaKnown RBP17.98■□□□□ 0.47
NUP54-213ENST00000513352 GLIS2Q9BZE0 524 aaPredicted RBP17.98■□□□□ 0.47
NUP54-213ENST00000513352 HELLSQ9NRZ9 838 aa17.98■□□□□ 0.47
NUP54-213ENST00000513352 ADM5C9JUS6 153 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 CDC45O75419 566 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 CHMLP26374 656 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 NFIAQ12857 509 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 MCMDC2Q4G0Z9 681 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 USP48Q86UV5 1035 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 MAPKAPK5Q8IW41 473 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 RUFY2Q8WXA3 655 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 SLC4A4Q9Y6R1 1079 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 FOCADQ5VW36 1801 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 NAV1Q8NEY1 1877 aa17.97■□□□□ 0.47
NUP54-213ENST00000513352 WDHD1O75717 1129 aaPredicted RBP17.96■□□□□ 0.47
NUP54-213ENST00000513352 RASA3Q14644 834 aa17.96■□□□□ 0.47
NUP54-213ENST00000513352 CDC37L1Q7L3B6 337 aa17.96■□□□□ 0.47
NUP54-213ENST00000513352 ZSCAN29Q8IWY8 852 aaPredicted RBP17.96■□□□□ 0.47
NUP54-213ENST00000513352 SMC1BQ8NDV3 1235 aa17.96■□□□□ 0.47
NUP54-213ENST00000513352 SDR42E1Q8WUS8 393 aa17.96■□□□□ 0.47
NUP54-213ENST00000513352 DDX4Q9NQI0 724 aaKnown RBP17.96■□□□□ 0.47
NUP54-213ENST00000513352 PGAP2Q9UHJ9 254 aa17.96■□□□□ 0.47
NUP54-213ENST00000513352 PRKAB2O43741 272 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 TOMM70O94826 608 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 APPP05067 770 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 MFAP1P55081 439 aaKnown RBP17.95■□□□□ 0.46
NUP54-213ENST00000513352 RBM46Q8TBY0 533 aaKnown RBP17.95■□□□□ 0.46
NUP54-213ENST00000513352 DDRGK1Q96HY6 314 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 575.4 ms