RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 RAD21O60216 631 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 NEK4P51957 841 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 MECOMQ03112 1051 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 TCP10Q12799 353 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 ZSCAN25Q6NSZ9 544 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 RAB11FIP4Q86YS3 637 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 ZNF526Q8TF50 670 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 SYT17Q9BSW7 474 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 CCDC94Q9BW85 323 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 RTL9Q8NET4 1388 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 SASS6Q6UVJ0 657 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 JAKMIP1Q96N16 626 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 MAST3O60307 1309 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 AOX1Q06278 1338 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 RREB1Q92766 1687 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 MAGEB6P1A0A0J9YX57 407 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 FBXO33Q7Z6M2 555 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 PCDHAC2Q9Y5I4 1007 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 V9GYY5 206 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 CYP2D7A0A087X1C5 515 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 ZKSCAN1P17029 563 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 KCNA3P22001 575 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 ARID4AP29374 1257 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 PKP1Q13835 747 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 LCORLQ8N3X6 602 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 NAPBQ9H115 298 aa10.21□□□□□ -0.77
LIMCH1-209ENST00000509277 CSPP1Q1MSJ5 1256 aa10.21□□□□□ -0.78
LIMCH1-209ENST00000509277 MAPKAPK5Q8IW41 473 aa10.21□□□□□ -0.78
LIMCH1-209ENST00000509277 VEZTQ9HBM0 779 aa10.21□□□□□ -0.78
LIMCH1-209ENST00000509277 INCENPQ9NQS7 918 aa10.21□□□□□ -0.78
LIMCH1-209ENST00000509277 USP25Q9UHP3 1055 aa10.21□□□□□ -0.78
LIMCH1-209ENST00000509277 PRDM1O75626 825 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 CD2BP2O95400 341 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 ADGRA1Q86SQ6 560 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 WDR66Q8TBY9 1149 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 APPBP2Q92624 585 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 CCDC171Q6TFL3 1326 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 N4BP2Q86UW6 1770 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 SLX4Q8IY92 1834 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 CLRN2A0PK11 232 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 DYNC1I1O14576 645 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 CASTP20810 708 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 PTMSP20962 102 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 TGFB2P61812 414 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 ZSCAN23Q3MJ62 389 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 RTKN2Q8IZC4 609 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 USP26Q9BXU7 913 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 KIF3AQ9Y496 699 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 ADD2P35612 726 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 STK3Q13188 491 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 TMC4Q7Z404 712 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 TGFBRAP1Q8WUH2 860 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 TAF6LQ9Y6J9 622 aa10.2□□□□□ -0.78
LIMCH1-209ENST00000509277 ZNF831Q5JPB2 1677 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 CTDSPL2Q05D32 466 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 DMTNQ08495 405 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 COA1Q9GZY4 146 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 RNF181Q9P0P0 153 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 KLRG2A4D1S0 409 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 BAG4O95429 457 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 SPTY2D1Q68D10 685 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 SAMD1Q6SPF0 538 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 RASEFQ8IZ41 740 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 SMIM22K7EJ46 135 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 ZSCAN20P17040 1043 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 FOSBP53539 338 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 SKIDA1Q1XH10 827 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 TDRD7Q8NHU6 1098 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 MCM9Q9NXL9 1143 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 ZKSCAN5Q9Y2L8 839 aa10.19□□□□□ -0.78
LIMCH1-209ENST00000509277 POLR3DP05423 398 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 ZFYP08048 801 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 HSPD1P10809 573 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 IARSP41252 1262 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 BTDP43251 543 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 RBM25P49756 843 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 ZMYM1Q5SVZ6 1142 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 OGFOD1Q8N543 542 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 SUPT20HQ8NEM7 779 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 ZKSCAN3Q9BRR0 538 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 CD2APQ9Y5K6 639 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 LAMB2P55268 1798 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 USP17L3A6NCW0 530 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 USP17L4A6NCW7 530 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 PSMD14O00487 310 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 USP17L1Q7RTZ2 530 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 MTERF4Q7Z6M4 381 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 TEX11Q8IYF3 940 aa10.18□□□□□ -0.78
LIMCH1-209ENST00000509277 SHTN1A0MZ66 631 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 ZNF213O14771 459 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 SLURP2P0DP57 97 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 ATP2B2Q01814 1243 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 ADCK5Q3MIX3 580 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 RNF20Q5VTR2 975 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 CREB3L3Q68CJ9 461 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 RALYLQ86SE5 291 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 TRIM34Q9BYJ4 488 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 CCDC39Q9UFE4 941 aa10.17□□□□□ -0.78
LIMCH1-209ENST00000509277 ZGPATQ8N5A5 531 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms