RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 NKD1Q969G9 470 aa9.25□□□□□ -0.93
VPS50-212ENST00000476413 KLHDC7BQ96G42 594 aa9.25□□□□□ -0.93
VPS50-212ENST00000476413 CARD10Q9BWT7 1032 aa9.25□□□□□ -0.93
VPS50-212ENST00000476413 TRIM37O94972 964 aa9.24□□□□□ -0.93
VPS50-212ENST00000476413 DGKGP49619 791 aa9.24□□□□□ -0.93
VPS50-212ENST00000476413 COL9A2Q14055 689 aaPredicted RBP9.24□□□□□ -0.93
VPS50-212ENST00000476413 MPP2Q14168 576 aa9.24□□□□□ -0.93
VPS50-212ENST00000476413 SEZ6Q53EL9 994 aa9.24□□□□□ -0.93
VPS50-212ENST00000476413 MAP1SQ66K74 1059 aaPredicted RBP9.24□□□□□ -0.93
VPS50-212ENST00000476413 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.24□□□□□ -0.93
VPS50-212ENST00000476413 DPH6Q7L8W6 267 aa9.24□□□□□ -0.93
VPS50-212ENST00000476413 DDX54Q8TDD1 881 aaKnown RBP9.24□□□□□ -0.93
VPS50-212ENST00000476413 LNPKQ9C0E8 428 aa9.24□□□□□ -0.93
VPS50-212ENST00000476413 CDK8P49336 464 aa9.23□□□□□ -0.93
VPS50-212ENST00000476413 LCE2AQ5TA79 106 aaPredicted RBP9.23□□□□□ -0.93
VPS50-212ENST00000476413 ZNF408Q9H9D4 720 aa9.23□□□□□ -0.93
VPS50-212ENST00000476413 ADAM11O75078 769 aa9.22□□□□□ -0.93
VPS50-212ENST00000476413 DEAF1O75398 565 aaPredicted RBP9.22□□□□□ -0.93
VPS50-212ENST00000476413 MAOBP27338 520 aa9.22□□□□□ -0.93
VPS50-212ENST00000476413 POU4F3Q15319 338 aa9.22□□□□□ -0.93
VPS50-212ENST00000476413 FAM117BQ6P1L5 589 aa9.22□□□□□ -0.93
VPS50-212ENST00000476413 REC114Q7Z4M0 266 aa9.22□□□□□ -0.93
VPS50-212ENST00000476413 DMRTC2Q8IXT2 367 aaPredicted RBP9.22□□□□□ -0.93
VPS50-212ENST00000476413 ZC3H12CQ9C0D7 883 aaKnown RBP9.22□□□□□ -0.93
VPS50-212ENST00000476413 CCDC86Q9H6F5 360 aaKnown RBP9.22□□□□□ -0.93
VPS50-212ENST00000476413 CYP11A1P05108 521 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 LMNB1P20700 586 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 ARL4DP49703 201 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 RPL6Q02878 288 aaKnown RBP9.21□□□□□ -0.94
VPS50-212ENST00000476413 KLHL23Q8NBE8 558 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 GPBAR1Q8TDU6 330 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 KCNB2Q92953 911 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 BRMS1Q9HCU9 246 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 STRIP2Q9ULQ0 834 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 PPT2Q9UMR5 302 aa9.21□□□□□ -0.94
VPS50-212ENST00000476413 POLR3KQ9Y2Y1 108 aaPredicted RBP9.21□□□□□ -0.94
VPS50-212ENST00000476413 ZNF862O60290 1169 aa9.2□□□□□ -0.94
VPS50-212ENST00000476413 STK10O94804 968 aaKnown RBP9.2□□□□□ -0.94
VPS50-212ENST00000476413 DLGAP3O95886 979 aa9.2□□□□□ -0.94
VPS50-212ENST00000476413 ETFBP38117 255 aa9.2□□□□□ -0.94
VPS50-212ENST00000476413 FOXD4L6Q3SYB3 417 aaPredicted RBP9.2□□□□□ -0.94
VPS50-212ENST00000476413 FOXD4L3Q6VB84 417 aaPredicted RBP9.2□□□□□ -0.94
VPS50-212ENST00000476413 ZNF775Q96BV0 537 aaPredicted RBP9.2□□□□□ -0.94
VPS50-212ENST00000476413 SHDQ96IW2 340 aa9.2□□□□□ -0.94
VPS50-212ENST00000476413 KRT82Q9NSB4 513 aa9.2□□□□□ -0.94
VPS50-212ENST00000476413 KCNK4Q9NYG8 393 aa9.2□□□□□ -0.94
VPS50-212ENST00000476413 MRVI1Q9Y6F6 885 aa9.2□□□□□ -0.94
VPS50-212ENST00000476413 DDX3YO15523 660 aaKnown RBP9.19□□□□□ -0.94
VPS50-212ENST00000476413 WFS1O76024 890 aa9.19□□□□□ -0.94
VPS50-212ENST00000476413 SSBP05455 408 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS50-212ENST00000476413 AMPD1P23109 780 aa9.19□□□□□ -0.94
VPS50-212ENST00000476413 SUZ12Q15022 739 aaKnown RBP9.19□□□□□ -0.94
VPS50-212ENST00000476413 CWF19L2Q2TBE0 894 aaKnown RBP9.19□□□□□ -0.94
VPS50-212ENST00000476413 ZNF385CQ66K41 422 aaPredicted RBP9.19□□□□□ -0.94
VPS50-212ENST00000476413 CCDC81Q6ZN84 652 aa9.19□□□□□ -0.94
VPS50-212ENST00000476413 WDR89Q96FK6 387 aaPredicted RBP9.19□□□□□ -0.94
VPS50-212ENST00000476413 CORO1BQ9BR76 489 aa9.19□□□□□ -0.94
VPS50-212ENST00000476413 HIRIP3Q9BW71 556 aaPredicted RBP9.19□□□□□ -0.94
VPS50-212ENST00000476413 LOC100289279A0A1B0GTE1 492 aa9.18□□□□□ -0.94
VPS50-212ENST00000476413 GFRA2O00451 464 aa9.18□□□□□ -0.94
VPS50-212ENST00000476413 EIF4EBP3O60516 100 aaPredicted RBP9.18□□□□□ -0.94
VPS50-212ENST00000476413 NLRP12P59046 1061 aa9.18□□□□□ -0.94
VPS50-212ENST00000476413 CLCQ05315 142 aa9.18□□□□□ -0.94
VPS50-212ENST00000476413 INPP5AQ14642 412 aa9.18□□□□□ -0.94
VPS50-212ENST00000476413 MAP4K3Q8IVH8 894 aa9.18□□□□□ -0.94
VPS50-212ENST00000476413 REXO1Q8N1G1 1221 aaKnown RBP9.18□□□□□ -0.94
VPS50-212ENST00000476413 SRRTQ9BXP5 876 aaKnown RBP9.18□□□□□ -0.94
VPS50-212ENST00000476413 ZNRF3Q9ULT6 936 aa9.18□□□□□ -0.94
VPS50-212ENST00000476413 CCDC144BQ3MJ40 725 aa9.17□□□□□ -0.94
VPS50-212ENST00000476413 LRFN4Q6PJG9 635 aa9.17□□□□□ -0.94
VPS50-212ENST00000476413 PMFBP1Q8TBY8 1022 aa9.17□□□□□ -0.94
VPS50-212ENST00000476413 TRIM11Q96F44 468 aa9.17□□□□□ -0.94
VPS50-212ENST00000476413 EHMT1Q9H9B1 1298 aa9.17□□□□□ -0.94
VPS50-212ENST00000476413 PCDHGC5Q9Y5F6 944 aa9.17□□□□□ -0.94
VPS50-212ENST00000476413 BPNT1O95861 308 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 SERINC3Q13530 473 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 KIF4BQ2VIQ3 1234 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 LINC00114Q6XXX2 140 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 GK5Q6ZS86 529 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 DTWD1Q8N5C7 304 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 FAM169BQ8N8A8 192 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 USP26Q9BXU7 913 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 PCDHA4Q9UN74 947 aa9.16□□□□□ -0.94
VPS50-212ENST00000476413 PRR36Q9H6K5 1346 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 KLF4O43474 513 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 ATE1O95260 518 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 LIG1P18858 919 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 MCM4P33991 863 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 CD68P34810 354 aaPredicted RBP9.15□□□□□ -0.94
VPS50-212ENST00000476413 GIPRP48546 466 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 ZNF165P49910 485 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 WIPI1Q5MNZ9 446 aaPredicted RBP9.15□□□□□ -0.94
VPS50-212ENST00000476413 PLPPR2Q96GM1 343 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 PIF1Q9H611 641 aa9.15□□□□□ -0.94
VPS50-212ENST00000476413 A0A0A0MRY4 1105 aa9.14□□□□□ -0.95
VPS50-212ENST00000476413 DLL1O00548 723 aa9.14□□□□□ -0.95
VPS50-212ENST00000476413 GRIN3BO60391 1043 aa9.14□□□□□ -0.95
VPS50-212ENST00000476413 ARHGEF15O94989 841 aa9.14□□□□□ -0.95
VPS50-212ENST00000476413 SNRPNP63162 240 aaKnown RBP9.14□□□□□ -0.95
VPS50-212ENST00000476413 SOGA3Q5TF21 947 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms