RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 ITPRIPQ8IWB1 547 aa11.16□□□□□ -0.62
USF1-204ENST00000472217 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.16□□□□□ -0.627e-6■□□□□ 9.2
USF1-204ENST00000472217 ZNF296Q8WUU4 475 aaPredicted RBP11.16□□□□□ -0.62
USF1-204ENST00000472217 OPTNQ96CV9 577 aa11.16□□□□□ -0.62
USF1-204ENST00000472217 NEUROD6Q96NK8 337 aa11.16□□□□□ -0.62
USF1-204ENST00000472217 CFHR5Q9BXR6 569 aa11.16□□□□□ -0.62
USF1-204ENST00000472217 R3HDMLQ9H3Y0 253 aa11.16□□□□□ -0.62
USF1-204ENST00000472217 C1orf115Q9H7X2 142 aa11.16□□□□□ -0.62
USF1-204ENST00000472217 RNF216Q9NWF9 866 aaPredicted RBP11.16□□□□□ -0.62
USF1-204ENST00000472217 GPR25O00155 361 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 ALDH1A1P00352 501 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 MAP3K9P80192 1104 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 G3BP1Q13283 466 aaKnown RBP eCLIP11.15□□□□□ -0.62
USF1-204ENST00000472217 NOM1Q5C9Z4 860 aaKnown RBP11.15□□□□□ -0.62
USF1-204ENST00000472217 CDC42EP5Q6NZY7 148 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 CTU1Q7Z7A3 348 aaKnown RBP11.15□□□□□ -0.62
USF1-204ENST00000472217 IFNL1Q8IU54 200 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 ZGPATQ8N5A5 531 aaKnown RBP11.15□□□□□ -0.62
USF1-204ENST00000472217 SSH3Q8TE77 659 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 FAM151AQ8WW52 585 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 ABCF2Q9UG63 623 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 MYH2Q9UKX2 1941 aa11.15□□□□□ -0.62
USF1-204ENST00000472217 GAKO14976 1311 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 ZBTB7BO15156 539 aaPredicted RBP11.14□□□□□ -0.63
USF1-204ENST00000472217 ATP8B2P98198 1209 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 TCP10Q12799 353 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 NFIAQ12857 509 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 GORABQ5T7V8 394 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 PI16Q6UXB8 463 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 HOOK2Q96ED9 719 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 WRNIP1Q96S55 665 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 USP40Q9NVE5 1235 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 HMG20BQ9P0W2 317 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 CSADQ9Y600 493 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 RFX7Q2KHR2 1363 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 DOCK2Q92608 1830 aa11.14□□□□□ -0.63
USF1-204ENST00000472217 TESPA1A2RU30 521 aaPredicted RBP11.13□□□□□ -0.63
USF1-204ENST00000472217 ARID4AP29374 1257 aaPredicted RBP11.13□□□□□ -0.63
USF1-204ENST00000472217 DCAF15Q66K64 600 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 SPTY2D1Q68D10 685 aaPredicted RBP11.13□□□□□ -0.63
USF1-204ENST00000472217 DZIP1Q86YF9 867 aaKnown RBP11.13□□□□□ -0.63
USF1-204ENST00000472217 SPATA5Q8NB90 893 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 PANK1Q8TE04 598 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 ZKSCAN4Q969J2 545 aaPredicted RBP11.13□□□□□ -0.63
USF1-204ENST00000472217 OTUD5Q96G74 571 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 MS4A4AQ96JQ5 239 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 PTPN18Q99952 460 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 FAM198AQ9UFP1 575 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 SNCAIPQ9Y6H5 919 aa11.13□□□□□ -0.63
USF1-204ENST00000472217 MROH7-TTC4A0A0A0MT08 1334 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 SPDYE5A6NIY4 337 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 FKTNO75072 461 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 MCAMP43121 646 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 MECOMQ03112 1051 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 OS9Q13438 667 aaPredicted RBP11.12□□□□□ -0.63
USF1-204ENST00000472217 TNNI3KQ59H18 835 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 MIGA2Q7L4E1 593 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 ZFPM1Q8IX07 1006 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 ZNF384Q8TF68 577 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 ZNF341Q9BYN7 854 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 GPR108Q9NPR9 543 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 FPGT-TNNI3KV9GXZ4 949 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 MAST2Q6P0Q8 1798 aa11.12□□□□□ -0.63
USF1-204ENST00000472217 CCL15-CCL14A0A0B4J2E2 113 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 SURF6O75683 361 aaKnown RBP11.11□□□□□ -0.63
USF1-204ENST00000472217 INPP5BP32019 993 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 BTDP43251 543 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 RGS3P49796 1198 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 GTF2A2P52657 109 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 CRHR2Q13324 411 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 CCL15Q16663 113 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 OTUD7BQ6GQQ9 843 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 TBC1D9Q6ZT07 1266 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 ERICH6Q7L0X2 663 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 ERO1BQ86YB8 467 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 SLF2Q8IX21 1173 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 BRI3BPQ8WY22 251 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 FAM163AQ96GL9 167 aaPredicted RBP11.11□□□□□ -0.63
USF1-204ENST00000472217 IDI2Q9BXS1 227 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 NOP58Q9Y2X3 529 aaKnown RBP11.11□□□□□ -0.63
USF1-204ENST00000472217 ATRNL1Q5VV63 1379 aa11.11□□□□□ -0.63
USF1-204ENST00000472217 AK9Q5TCS8 1911 aa11.1□□□□□ -0.63
USF1-204ENST00000472217 ENTPD3O75355 529 aa11.1□□□□□ -0.63
USF1-204ENST00000472217 WDHD1O75717 1129 aaPredicted RBP11.1□□□□□ -0.63
USF1-204ENST00000472217 UQCRFS1P1P0C7P4 283 aa11.1□□□□□ -0.63
USF1-204ENST00000472217 PKN2Q16513 984 aaKnown RBP11.1□□□□□ -0.63
USF1-204ENST00000472217 CEP85Q6P2H3 762 aa11.1□□□□□ -0.63
USF1-204ENST00000472217 NSUN4Q96CB9 384 aaKnown RBP11.1□□□□□ -0.63
USF1-204ENST00000472217 DBNDD2Q9BQY9 259 aa11.1□□□□□ -0.63
USF1-204ENST00000472217 DDX4Q9NQI0 724 aaKnown RBP11.1□□□□□ -0.63
USF1-204ENST00000472217 ZNF112Q9UJU3 913 aa11.1□□□□□ -0.63
USF1-204ENST00000472217 GPR75-ASB3A0A0A6YYF3 556 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 IRF6O14896 467 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 NPM3O75607 178 aaKnown RBP11.09□□□□□ -0.63
USF1-204ENST00000472217 RGS19P49795 217 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 RHBDL3P58872 404 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 GSTO1P78417 241 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 PPIL2Q13356 520 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 PICALMQ13492 652 aa11.09□□□□□ -0.63
USF1-204ENST00000472217 TTC39AQ5SRH9 613 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms