RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RILPL2Q969X0 211 aa20.55■□□□□ 0.88
COL7A1-202ENST00000422991 ZFYP08048 801 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-202ENST00000422991 UBE3CQ15386 1083 aa20.54■□□□□ 0.88
COL7A1-202ENST00000422991 LRRFIP1Q32MZ4 808 aaKnown RBP20.54■□□□□ 0.88
COL7A1-202ENST00000422991 BMP2KLQ5H9B9 411 aa20.54■□□□□ 0.88
COL7A1-202ENST00000422991 TICAM2Q86XR7 235 aa20.54■□□□□ 0.88
COL7A1-202ENST00000422991 PRMT6Q96LA8 375 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-202ENST00000422991 FOCADQ5VW36 1801 aa20.54■□□□□ 0.88
COL7A1-202ENST00000422991 GPR75-ASB3A0A0A6YYF3 556 aa20.53■□□□□ 0.88
COL7A1-202ENST00000422991 RNF113AO15541 343 aaKnown RBP20.53■□□□□ 0.88
COL7A1-202ENST00000422991 BTDP43251 543 aa20.53■□□□□ 0.88
COL7A1-202ENST00000422991 SLFNL1Q499Z3 407 aa20.53■□□□□ 0.88
COL7A1-202ENST00000422991 EAPPQ56P03 285 aaPredicted RBP20.53■□□□□ 0.88
COL7A1-202ENST00000422991 ASTN2O75129 1339 aaPredicted RBP20.53■□□□□ 0.88
COL7A1-202ENST00000422991 SPDYE2Q495Y8 402 aa20.52■□□□□ 0.88
COL7A1-202ENST00000422991 POTEIP0CG38 1075 aa20.51■□□□□ 0.87
COL7A1-202ENST00000422991 POTEJP0CG39 1038 aa20.51■□□□□ 0.87
COL7A1-202ENST00000422991 CHADLQ6NUI6 762 aa20.51■□□□□ 0.87
COL7A1-202ENST00000422991 MIGA1Q8NAN2 632 aa20.51■□□□□ 0.87
COL7A1-202ENST00000422991 ZC3H15Q8WU90 426 aaKnown RBP20.51■□□□□ 0.87
COL7A1-202ENST00000422991 APPBP2Q92624 585 aa20.51■□□□□ 0.87
COL7A1-202ENST00000422991 NOL10Q9BSC4 688 aaKnown RBP20.51■□□□□ 0.87
COL7A1-202ENST00000422991 TDRD3Q9H7E2 651 aaKnown RBP20.51■□□□□ 0.87
COL7A1-202ENST00000422991 GGA3Q9NZ52 723 aa20.51■□□□□ 0.87
COL7A1-202ENST00000422991 POLR2AP24928 1970 aaKnown RBP20.5■□□□□ 0.87
COL7A1-202ENST00000422991 CLRN2A0PK11 232 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 MYO1BO43795 1136 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 RHBDL3P58872 404 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 PPP4CP60510 307 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 CDC42EP5Q6NZY7 148 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 LDHDQ86WU2 507 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 RIOK1Q9BRS2 568 aaKnown RBP20.5■□□□□ 0.87
COL7A1-202ENST00000422991 AATFQ9NY61 560 aaKnown RBP eCLIP20.5■□□□□ 0.87
COL7A1-202ENST00000422991 ZNF70Q9UC06 446 aaPredicted RBP20.5■□□□□ 0.87
COL7A1-202ENST00000422991 PGAP2Q9UHJ9 254 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 PITPNM2Q9BZ72 1349 aa20.5■□□□□ 0.87
COL7A1-202ENST00000422991 BAG3O95817 575 aa20.49■□□□□ 0.87
COL7A1-202ENST00000422991 DYNLL1P63167 89 aaKnown RBP20.49■□□□□ 0.87
COL7A1-202ENST00000422991 ZMYM1Q5SVZ6 1142 aa20.49■□□□□ 0.87
COL7A1-202ENST00000422991 ANGEL2Q5VTE6 544 aaKnown RBP20.49■□□□□ 0.87
COL7A1-202ENST00000422991 CERS3Q8IU89 383 aa20.49■□□□□ 0.87
COL7A1-202ENST00000422991 OSBP2Q969R2 916 aa20.49■□□□□ 0.87
COL7A1-202ENST00000422991 NAV1Q8NEY1 1877 aa20.48■□□□□ 0.87
COL7A1-202ENST00000422991 DDX60LQ5H9U9 1706 aaKnown RBP20.48■□□□□ 0.87
COL7A1-202ENST00000422991 MAGEB6P1A0A0J9YX57 407 aa20.48■□□□□ 0.87
COL7A1-202ENST00000422991 PLCG2P16885 1265 aa20.48■□□□□ 0.87
COL7A1-202ENST00000422991 PUS7LQ9H0K6 701 aaKnown RBP20.48■□□□□ 0.87
COL7A1-202ENST00000422991 USP40Q9NVE5 1235 aa20.48■□□□□ 0.87
COL7A1-202ENST00000422991 A0A0D9SFI3 127 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 HIP1O00291 1037 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 MBD4O95243 580 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 NMIQ13287 307 aaPredicted RBP20.47■□□□□ 0.87
COL7A1-202ENST00000422991 LCORLQ8N3X6 602 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 SH3RF3Q8TEJ3 882 aaPredicted RBP20.47■□□□□ 0.87
COL7A1-202ENST00000422991 VEZTQ9HBM0 779 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 DIAPH3Q9NSV4 1193 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 TMOD2Q9NZR1 351 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 CLEC11AQ9Y240 323 aa20.47■□□□□ 0.87
COL7A1-202ENST00000422991 M0R2C6 588 aa20.46■□□□□ 0.87
COL7A1-202ENST00000422991 WDHD1O75717 1129 aaPredicted RBP20.46■□□□□ 0.87
COL7A1-202ENST00000422991 CACNB3P54284 484 aa20.46■□□□□ 0.87
COL7A1-202ENST00000422991 FKBP1CQ5VVH2 108 aa20.46■□□□□ 0.87
COL7A1-202ENST00000422991 APOBEC3FQ8IUX4 373 aaKnown RBP20.46■□□□□ 0.87
COL7A1-202ENST00000422991 TEX11Q8IYF3 940 aa20.46■□□□□ 0.87
COL7A1-202ENST00000422991 FAM227BQ96M60 508 aa20.46■□□□□ 0.87
COL7A1-202ENST00000422991 SEC62Q99442 399 aaKnown RBP20.46■□□□□ 0.87
COL7A1-202ENST00000422991 ARMT1Q9H993 441 aa20.46■□□□□ 0.87
COL7A1-202ENST00000422991 DNAJC5GQ8N7S2 189 aa20.45■□□□□ 0.86
COL7A1-202ENST00000422991 AIDAQ96BJ3 306 aa20.45■□□□□ 0.86
COL7A1-202ENST00000422991 DCPSQ96C86 337 aaKnown RBP20.45■□□□□ 0.86
COL7A1-202ENST00000422991 IDI2Q9BXS1 227 aa20.45■□□□□ 0.86
COL7A1-202ENST00000422991 HELLSQ9NRZ9 838 aa20.45■□□□□ 0.86
COL7A1-202ENST00000422991 CNTNAP1P78357 1384 aa20.45■□□□□ 0.86
COL7A1-202ENST00000422991 CHMLP26374 656 aa20.44■□□□□ 0.86
COL7A1-202ENST00000422991 NFIAQ12857 509 aa20.44■□□□□ 0.86
COL7A1-202ENST00000422991 FAM198AQ9UFP1 575 aa20.44■□□□□ 0.86
COL7A1-202ENST00000422991 MYH1P12882 1939 aa20.43■□□□□ 0.86
COL7A1-202ENST00000422991 TCP10L2B9ZVM9 353 aa20.43■□□□□ 0.86
COL7A1-202ENST00000422991 GPAA1O43292 621 aa20.43■□□□□ 0.86
COL7A1-202ENST00000422991 TNFAIP1Q13829 316 aa20.43■□□□□ 0.86
COL7A1-202ENST00000422991 MAP1SQ66K74 1059 aaPredicted RBP20.43■□□□□ 0.86
COL7A1-202ENST00000422991 KRT26Q7Z3Y9 468 aa20.43■□□□□ 0.86
COL7A1-202ENST00000422991 STRBPQ96SI9 672 aaKnown RBP20.43■□□□□ 0.86
COL7A1-202ENST00000422991 CRNKL1Q9BZJ0 848 aaKnown RBP20.43■□□□□ 0.86
COL7A1-202ENST00000422991 DDX4Q9NQI0 724 aaKnown RBP20.43■□□□□ 0.86
COL7A1-202ENST00000422991 SCAF8Q9UPN6 1271 aaKnown RBP20.43■□□□□ 0.86
COL7A1-202ENST00000422991 COL2A1P02458 1487 aaPredicted RBP20.43■□□□□ 0.86
COL7A1-202ENST00000422991 NPM3O75607 178 aaKnown RBP20.42■□□□□ 0.86
COL7A1-202ENST00000422991 HTRA3P83110 453 aa20.42■□□□□ 0.86
COL7A1-202ENST00000422991 MCMDC2Q4G0Z9 681 aa20.42■□□□□ 0.86
COL7A1-202ENST00000422991 CWC27Q6UX04 472 aaKnown RBP20.42■□□□□ 0.86
COL7A1-202ENST00000422991 CCDC129Q6ZRS4 1044 aa20.42■□□□□ 0.86
COL7A1-202ENST00000422991 FAM83AQ86UY5 434 aa20.42■□□□□ 0.86
COL7A1-202ENST00000422991 SULF1Q8IWU6 871 aa20.42■□□□□ 0.86
COL7A1-202ENST00000422991 RPAP1Q9BWH6 1393 aaPredicted RBP20.42■□□□□ 0.86
COL7A1-202ENST00000422991 BAZ2AQ9UIF9 1905 aaKnown RBP20.41■□□□□ 0.86
COL7A1-202ENST00000422991 ADM5C9JUS6 153 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 ENTPD3O75355 529 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 CDC45O75419 566 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 TNNI2P48788 182 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms