RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RHOXF2BP0C7M4 288 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 PFKFB1P16118 471 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 MYSM1Q5VVJ2 828 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 FBXO38Q6PIJ6 1188 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 DYDC1Q8WWB3 177 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 RHOXF2Q9BQY4 288 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 NEBLO76041 1014 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 SEC31AO94979 1220 aaKnown RBP13.64□□□□□ -0.23
HMGB1-206ENST00000405805 FGAP02671 866 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 RNF187Q5TA31 235 aaPredicted RBP13.64□□□□□ -0.23
HMGB1-206ENST00000405805 HINFPQ9BQA5 517 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 ADCY9O60503 1353 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 EYA2O00167 538 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 MARCH6O60337 910 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 XAGE2Q96GT9 111 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 PFKFB2O60825 505 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 HNRNPH2P55795 449 aaKnown RBP13.63□□□□□ -0.23
HMGB1-206ENST00000405805 PPARDQ03181 441 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 STOX1Q6ZVD7 989 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 FAM212AQ96EL1 285 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 EEF2KMTQ96G04 330 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 INCENPQ9NQS7 918 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 FANCLQ9NW38 375 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 XBP1P17861 261 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 GBP6Q6ZN66 633 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 ELP1O95163 1332 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 KIF20BQ96Q89 1820 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 POLR2DO15514 142 aaKnown RBP13.63□□□□□ -0.23
HMGB1-206ENST00000405805 MYL5Q02045 173 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 RPAINQ86UA6 219 aa13.63□□□□□ -0.23
HMGB1-206ENST00000405805 CPSF2Q9P2I0 782 aaKnown RBP13.63□□□□□ -0.23
HMGB1-206ENST00000405805 NPHP4O75161 1426 aaPredicted RBP13.62□□□□□ -0.23
HMGB1-206ENST00000405805 ZSCAN26Q16670 478 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 NAA16Q6N069 864 aaPredicted RBP13.62□□□□□ -0.23
HMGB1-206ENST00000405805 NUP88Q99567 741 aaPredicted RBP13.62□□□□□ -0.23
HMGB1-206ENST00000405805 NACAP1Q9BZK3 213 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 ANKRD65E5RJM6 399 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 CYP27B1O15528 508 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 FKBP15Q5T1M5 1219 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 JAKMIP3Q5VZ66 844 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 KRT40Q6A162 431 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 OSBP2Q969R2 916 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 PLIN2Q99541 437 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 RABEP2Q9H5N1 569 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 CCT6AP40227 531 aaKnown RBP13.62□□□□□ -0.23
HMGB1-206ENST00000405805 CTDSPL2Q05D32 466 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 GRAMD1CQ8IYS0 662 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 HAUS7Q99871 368 aa13.62□□□□□ -0.23
HMGB1-206ENST00000405805 SNAP23O00161 211 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 KIF5CO60282 957 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 PRDM1O75626 825 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 STARD3NLO95772 234 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 ADALQ6DHV7 355 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 EP400NLQ6ZTU2 488 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 RCOR1Q9UKL0 485 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 NFE2L3Q9Y4A8 694 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 ENOX2Q16206 610 aaKnown RBP13.61□□□□□ -0.23
HMGB1-206ENST00000405805 ARFGAP3Q9NP61 516 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 JAG2Q9Y219 1238 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 IL2RBP14784 551 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 KMT5BQ4FZB7 885 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 MRFAP1L1Q96HT8 127 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 GDAP1L1Q96MZ0 367 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 BAG1Q99933 345 aaPredicted RBP13.61□□□□□ -0.23
HMGB1-206ENST00000405805 CABP5Q9NP86 173 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 KCNH3Q9ULD8 1083 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 M0R2C6 588 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 LLPHQ9BRT6 129 aaKnown RBP13.61□□□□□ -0.23
HMGB1-206ENST00000405805 FUCA2Q9BTY2 467 aa13.61□□□□□ -0.23
HMGB1-206ENST00000405805 ANKARQ7Z5J8 1434 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 DIP2AQ14689 1571 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 N4BP3O15049 544 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 ARID4AP29374 1257 aaPredicted RBP13.6□□□□□ -0.23
HMGB1-206ENST00000405805 ATP6V1AP38606 617 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 GYS2P54840 703 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 MFSD6Q6ZSS7 791 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 BRMS1Q9HCU9 246 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 VPS18Q9P253 973 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 MAST3O60307 1309 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 ERCC3P19447 782 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 GBP2P32456 591 aaPredicted RBP13.6□□□□□ -0.23
HMGB1-206ENST00000405805 HELLSQ9NRZ9 838 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 MATR3P43243 847 aaKnown RBP eCLIP13.6□□□□□ -0.23
HMGB1-206ENST00000405805 ZNF569Q5MCW4 686 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 PLA2G4DQ86XP0 818 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 SYNE4Q8N205 404 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 PPP1R13BQ96KQ4 1090 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 ZCCHC17Q9NP64 241 aaKnown RBP13.6□□□□□ -0.23
HMGB1-206ENST00000405805 COPRSQ9NQ92 184 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 DACH1Q9UI36 760 aa13.6□□□□□ -0.23
HMGB1-206ENST00000405805 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.6□□□□□ -0.232e-7■■■■□ 22.6
HMGB1-206ENST00000405805 ANKRD18BA2A2Z9 1011 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 NAA25Q14CX7 972 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 MAGEB6Q8N7X4 407 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 RGS22Q8NE09 1264 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 FBXO18Q8NFZ0 1043 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 PIK3R5Q8WYR1 880 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 ACSBG1Q96GR2 724 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 KAZALD1Q96I82 304 aa13.59□□□□□ -0.23
HMGB1-206ENST00000405805 JRKLQ9Y4A0 524 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms