RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 PSMD1Q99460 953 aa27.51■■■□□ 2
SDF4-202ENST00000360001 PPP1R1BQ9UD71 204 aaPredicted RBP27.51■■■□□ 2
SDF4-202ENST00000360001 SUGT1Q9Y2Z0 365 aa27.51■■■□□ 2
SDF4-202ENST00000360001 MROH7-TTC4A0A0A0MT08 1334 aa27.51■■□□□ 1.99
SDF4-202ENST00000360001 SCN9AQ15858 1988 aa27.51■■□□□ 1.99
SDF4-202ENST00000360001 LDHCP07864 332 aa27.51■■□□□ 1.99
SDF4-202ENST00000360001 CUL4AQ13619 759 aa27.51■■□□□ 1.99
SDF4-202ENST00000360001 DHX32Q7L7V1 743 aaKnown RBP27.51■■□□□ 1.99
SDF4-202ENST00000360001 TBC1D10CQ8IV04 446 aa27.51■■□□□ 1.99
SDF4-202ENST00000360001 LARP6Q9BRS8 491 aaKnown RBP27.51■■□□□ 1.99
SDF4-202ENST00000360001 KCNQ5Q9NR82 932 aa27.5■■□□□ 1.99
SDF4-202ENST00000360001 ZNF646O15015 1829 aaPredicted RBP27.5■■□□□ 1.99
SDF4-202ENST00000360001 TOB2Q14106 344 aaPredicted RBP27.49■■□□□ 1.99
SDF4-202ENST00000360001 TIAM2Q8IVF5 1701 aa27.49■■□□□ 1.99
SDF4-202ENST00000360001 PPP4CP60510 307 aa27.49■■□□□ 1.99
SDF4-202ENST00000360001 EXOSC10Q01780 885 aaKnown RBP27.49■■□□□ 1.99
SDF4-202ENST00000360001 GIMAP6Q6P9H5 292 aa27.49■■□□□ 1.99
SDF4-202ENST00000360001 FAM163AQ96GL9 167 aaPredicted RBP27.49■■□□□ 1.99
SDF4-202ENST00000360001 CRNKL1Q9BZJ0 848 aaKnown RBP27.49■■□□□ 1.99
SDF4-202ENST00000360001 PPIP5K2O43314 1243 aa27.48■■□□□ 1.99
SDF4-202ENST00000360001 ANKRD1Q15327 319 aa27.48■■□□□ 1.99
SDF4-202ENST00000360001 DALRD3Q5D0E6 543 aaKnown RBP27.48■■□□□ 1.99
SDF4-202ENST00000360001 SOGA3Q5TF21 947 aa27.48■■□□□ 1.99
SDF4-202ENST00000360001 MXD3Q9BW11 206 aa27.48■■□□□ 1.99
SDF4-202ENST00000360001 BAZ2AQ9UIF9 1905 aaKnown RBP27.48■■□□□ 1.99
SDF4-202ENST00000360001 GAKO14976 1311 aa27.47■■□□□ 1.99
SDF4-202ENST00000360001 MB21D2Q8IYB1 491 aaPredicted RBP27.47■■□□□ 1.99
SDF4-202ENST00000360001 KLHL34Q8N239 644 aa27.47■■□□□ 1.99
SDF4-202ENST00000360001 LARGE1O95461 756 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 BAG3O95817 575 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 STRIP1Q5VSL9 837 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 SLF2Q8IX21 1173 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 NCOA7Q8NI08 942 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 GPR75-ASB3A0A0A6YYF3 556 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 CTDSPL2Q05D32 466 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 Q6ZUG5 572 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 SH3RF3Q8TEJ3 882 aaPredicted RBP27.46■■□□□ 1.99
SDF4-202ENST00000360001 ATP8A2Q9NTI2 1148 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 TPCN1Q9ULQ1 816 aa27.46■■□□□ 1.99
SDF4-202ENST00000360001 DACT2Q5SW24 774 aa27.45■■□□□ 1.98
SDF4-202ENST00000360001 ZSCAN31Q96LW9 406 aaPredicted RBP27.45■■□□□ 1.98
SDF4-202ENST00000360001 NOL10Q9BSC4 688 aaKnown RBP27.45■■□□□ 1.98
SDF4-202ENST00000360001 LRRC2Q9BYS8 371 aa27.45■■□□□ 1.98
SDF4-202ENST00000360001 DCP1AQ9NPI6 582 aaPredicted RBP27.45■■□□□ 1.98
SDF4-202ENST00000360001 BTDP43251 543 aa27.44■■□□□ 1.98
SDF4-202ENST00000360001 FKBP1AP62942 108 aaKnown RBP27.44■■□□□ 1.98
SDF4-202ENST00000360001 INTS4Q96HW7 963 aaKnown RBP27.44■■□□□ 1.98
SDF4-202ENST00000360001 AGXT2Q9BYV1 514 aa27.44■■□□□ 1.98
SDF4-202ENST00000360001 ANAPC4Q9UJX5 808 aa27.44■■□□□ 1.98
SDF4-202ENST00000360001 TACC3Q9Y6A5 838 aa27.44■■□□□ 1.98
SDF4-202ENST00000360001 PPARAQ07869 468 aa27.44■■□□□ 1.98
SDF4-202ENST00000360001 RALYLQ86SE5 291 aaKnown RBP27.44■■□□□ 1.98
SDF4-202ENST00000360001 SH2B1Q9NRF2 756 aaPredicted RBP27.44■■□□□ 1.98
SDF4-202ENST00000360001 ZNF277Q9NRM2 450 aaPredicted RBP27.44■■□□□ 1.98
SDF4-202ENST00000360001 NEDD4P46934 1319 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 USP17L3A6NCW0 530 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 USP17L4A6NCW7 530 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 YDJCA8MPS7 323 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 CHST3Q7LGC8 479 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 USP17L1Q7RTZ2 530 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 CERS3Q8IU89 383 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 NKX2-3Q8TAU0 364 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 CHMP5Q9NZZ3 219 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 TTF2Q9UNY4 1162 aaKnown RBP27.43■■□□□ 1.98
SDF4-202ENST00000360001 COL4A5P29400 1685 aa27.43■■□□□ 1.98
SDF4-202ENST00000360001 F8W031 263 aaPredicted RBP27.42■■□□□ 1.98
SDF4-202ENST00000360001 MCM5P33992 734 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 TRDNQ13061 729 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 ME3Q16798 604 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 AKNAD1Q5T1N1 836 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 CTR9Q6PD62 1173 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 STAG1Q8WVM7 1258 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 DAGLAQ9Y4D2 1042 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 FER1L6Q2WGJ9 1857 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 ANTXR2P58335 489 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 VPS33BQ9H267 617 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 INCENPQ9NQS7 918 aa27.42■■□□□ 1.98
SDF4-202ENST00000360001 MKRN1Q9UHC7 482 aaKnown RBP27.42■■□□□ 1.98
SDF4-202ENST00000360001 CDK5RAP2Q96SN8 1893 aa27.41■■□□□ 1.98
SDF4-202ENST00000360001 PSME4Q14997 1843 aa27.41■■□□□ 1.98
SDF4-202ENST00000360001 MINDY4BA8MYZ0 360 aa27.41■■□□□ 1.98
SDF4-202ENST00000360001 ILDR2Q71H61 639 aa27.41■■□□□ 1.98
SDF4-202ENST00000360001 FBXL16Q8N461 479 aa27.41■■□□□ 1.98
SDF4-202ENST00000360001 BRF1Q92994 677 aa27.41■■□□□ 1.98
SDF4-202ENST00000360001 CIZ1Q9ULV3 898 aaPredicted RBP27.41■■□□□ 1.98
SDF4-202ENST00000360001 WDR19Q8NEZ3 1342 aa27.41■■□□□ 1.98
SDF4-202ENST00000360001 SMIM22K7EJ46 135 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 LARGE2Q8N3Y3 721 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 SPON1Q9HCB6 807 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 CWC22Q9HCG8 908 aaKnown RBP27.4■■□□□ 1.98
SDF4-202ENST00000360001 LAMB1P07942 1786 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 CYP2D7A0A087X1C5 515 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 USP17L12C9JPN9 530 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 USP17L21D6R901 530 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 PRC1O43663 620 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 RHBDL3P58872 404 aa27.4■■□□□ 1.98
SDF4-202ENST00000360001 B4E1Z4 1266 aa27.39■■□□□ 1.98
SDF4-202ENST00000360001 PLCG2P16885 1265 aa27.39■■□□□ 1.98
SDF4-202ENST00000360001 FGD1P98174 961 aa27.39■■□□□ 1.98
SDF4-202ENST00000360001 ST3GAL1Q11201 340 aa27.39■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms