RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 DIXDC1Q155Q3 683 aa22.19■■□□□ 1.14
CLN3-204ENST00000357857 NOL8Q76FK4 1167 aaKnown RBP22.19■■□□□ 1.14
CLN3-204ENST00000357857 SLF2Q8IX21 1173 aa22.19■■□□□ 1.14
CLN3-204ENST00000357857 PSME4Q14997 1843 aa22.18■■□□□ 1.14
CLN3-204ENST00000357857 HSP90AA1P07900 732 aaKnown RBP22.18■■□□□ 1.14
CLN3-204ENST00000357857 COL9A3Q14050 684 aaPredicted RBP22.18■■□□□ 1.14
CLN3-204ENST00000357857 SDR42E1Q8WUS8 393 aa22.18■■□□□ 1.14
CLN3-204ENST00000357857 NOL10Q9BSC4 688 aaKnown RBP22.18■■□□□ 1.14
CLN3-204ENST00000357857 CRNKL1Q9BZJ0 848 aaKnown RBP22.18■■□□□ 1.14
CLN3-204ENST00000357857 CERS5Q8N5B7 392 aa22.17■■□□□ 1.14
CLN3-204ENST00000357857 TMX3Q96JJ7 454 aa22.17■■□□□ 1.14
CLN3-204ENST00000357857 SPON1Q9HCB6 807 aa22.17■■□□□ 1.14
CLN3-204ENST00000357857 TIAM2Q8IVF5 1701 aa22.17■■□□□ 1.14
CLN3-204ENST00000357857 BAG3O95817 575 aa22.17■■□□□ 1.14
CLN3-204ENST00000357857 ALDH8A1Q9H2A2 487 aaPredicted RBP22.17■■□□□ 1.14
CLN3-204ENST00000357857 SLKQ9H2G2 1235 aaPredicted RBP22.17■■□□□ 1.14
CLN3-204ENST00000357857 CDK5RAP2Q96SN8 1893 aa22.17■■□□□ 1.14
CLN3-204ENST00000357857 PPP4CP60510 307 aa22.16■■□□□ 1.14
CLN3-204ENST00000357857 FKBP1AP62942 108 aaKnown RBP22.16■■□□□ 1.14
CLN3-204ENST00000357857 STRIP1Q5VSL9 837 aa22.16■■□□□ 1.14
CLN3-204ENST00000357857 GIMAP6Q6P9H5 292 aa22.16■■□□□ 1.14
CLN3-204ENST00000357857 FAM163AQ96GL9 167 aaPredicted RBP22.16■■□□□ 1.14
CLN3-204ENST00000357857 NBPF3Q9H094 633 aa22.16■■□□□ 1.14
CLN3-204ENST00000357857 VPS33BQ9H267 617 aa22.16■■□□□ 1.14
CLN3-204ENST00000357857 KCNQ5Q9NR82 932 aa22.16■■□□□ 1.14
CLN3-204ENST00000357857 DHX32Q7L7V1 743 aaKnown RBP22.15■■□□□ 1.14
CLN3-204ENST00000357857 CERS3Q8IU89 383 aa22.15■■□□□ 1.14
CLN3-204ENST00000357857 MXD3Q9BW11 206 aa22.15■■□□□ 1.14
CLN3-204ENST00000357857 LIMCH1Q9UPQ0 1083 aa22.15■■□□□ 1.14
CLN3-204ENST00000357857 LAMB1P07942 1786 aa22.15■■□□□ 1.14
CLN3-204ENST00000357857 GAKO14976 1311 aa22.15■■□□□ 1.14
CLN3-204ENST00000357857 USP17L3A6NCW0 530 aa22.14■■□□□ 1.14
CLN3-204ENST00000357857 USP17L4A6NCW7 530 aa22.14■■□□□ 1.14
CLN3-204ENST00000357857 ANKRD1Q15327 319 aa22.14■■□□□ 1.14
CLN3-204ENST00000357857 USP17L1Q7RTZ2 530 aa22.14■■□□□ 1.14
CLN3-204ENST00000357857 TBC1D10CQ8IV04 446 aa22.14■■□□□ 1.14
CLN3-204ENST00000357857 TCEANC2Q96MN5 208 aa22.14■■□□□ 1.14
CLN3-204ENST00000357857 ZNF277Q9NRM2 450 aaPredicted RBP22.14■■□□□ 1.14
CLN3-204ENST00000357857 ARFGEF1Q9Y6D6 1849 aa22.14■■□□□ 1.14
CLN3-204ENST00000357857 GPR75-ASB3A0A0A6YYF3 556 aa22.14■■□□□ 1.13
CLN3-204ENST00000357857 BTDP43251 543 aa22.14■■□□□ 1.13
CLN3-204ENST00000357857 LARGE2Q8N3Y3 721 aa22.14■■□□□ 1.13
CLN3-204ENST00000357857 NCOA7Q8NI08 942 aa22.14■■□□□ 1.13
CLN3-204ENST00000357857 ATP8A2Q9NTI2 1148 aa22.14■■□□□ 1.13
CLN3-204ENST00000357857 TTF2Q9UNY4 1162 aaKnown RBP22.14■■□□□ 1.13
CLN3-204ENST00000357857 NAV1Q8NEY1 1877 aa22.13■■□□□ 1.13
CLN3-204ENST00000357857 F8W031 263 aaPredicted RBP22.13■■□□□ 1.13
CLN3-204ENST00000357857 DACT2Q5SW24 774 aa22.13■■□□□ 1.13
CLN3-204ENST00000357857 RALYLQ86SE5 291 aaKnown RBP22.13■■□□□ 1.13
CLN3-204ENST00000357857 FOXD4L1Q9NU39 408 aa22.13■■□□□ 1.13
CLN3-204ENST00000357857 EXOSC10Q01780 885 aaKnown RBP22.12■■□□□ 1.13
CLN3-204ENST00000357857 TRDNQ13061 729 aa22.12■■□□□ 1.13
CLN3-204ENST00000357857 SH3RF3Q8TEJ3 882 aaPredicted RBP22.12■■□□□ 1.13
CLN3-204ENST00000357857 DCP1AQ9NPI6 582 aaPredicted RBP22.12■■□□□ 1.13
CLN3-204ENST00000357857 BCS1LQ9Y276 419 aa22.12■■□□□ 1.13
CLN3-204ENST00000357857 YDJCA8MPS7 323 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 PLCG2P16885 1265 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 CTDSPL2Q05D32 466 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 PPARAQ07869 468 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 CUL4AQ13619 759 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 TOB2Q14106 344 aaPredicted RBP22.11■■□□□ 1.13
CLN3-204ENST00000357857 Q6ZUG5 572 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 NLGN2Q8NFZ4 835 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 ZSCAN31Q96LW9 406 aaPredicted RBP22.11■■□□□ 1.13
CLN3-204ENST00000357857 LARP6Q9BRS8 491 aaKnown RBP22.11■■□□□ 1.13
CLN3-204ENST00000357857 ADAMTSL1Q8N6G6 1762 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 FOCADQ5VW36 1801 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 MB21D2Q8IYB1 491 aaPredicted RBP22.11■■□□□ 1.13
CLN3-204ENST00000357857 TAOK3Q9H2K8 898 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 ANAPC4Q9UJX5 808 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 DAGLAQ9Y4D2 1042 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 COL4A5P29400 1685 aa22.11■■□□□ 1.13
CLN3-204ENST00000357857 MINDY4BA8MYZ0 360 aa22.1■■□□□ 1.13
CLN3-204ENST00000357857 IARSP41252 1262 aaKnown RBP22.1■■□□□ 1.13
CLN3-204ENST00000357857 USP5P45974 858 aa22.1■■□□□ 1.13
CLN3-204ENST00000357857 AKNAD1Q5T1N1 836 aa22.1■■□□□ 1.13
CLN3-204ENST00000357857 MCM5P33992 734 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 FGD1P98174 961 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 CTR9Q6PD62 1173 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 STAG1Q8WVM7 1258 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 LRRC2Q9BYS8 371 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 SH2B1Q9NRF2 756 aaPredicted RBP22.09■■□□□ 1.13
CLN3-204ENST00000357857 ECM29Q5VYK3 1845 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 SCNN1DP51172 638 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 HHIPL2Q6UWX4 724 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 MFSD6Q6ZSS7 791 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 NIM1KQ8IY84 436 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 TEKT1Q969V4 418 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 RNF41Q9H4P4 317 aaPredicted RBP22.09■■□□□ 1.13
CLN3-204ENST00000357857 CNNM2Q9H8M5 875 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 ARPP21Q9UBL0 812 aaPredicted RBP22.09■■□□□ 1.13
CLN3-204ENST00000357857 TPCN1Q9ULQ1 816 aa22.09■■□□□ 1.13
CLN3-204ENST00000357857 NEDD4P46934 1319 aa22.08■■□□□ 1.13
CLN3-204ENST00000357857 WDR19Q8NEZ3 1342 aa22.08■■□□□ 1.13
CLN3-204ENST00000357857 USP17L12C9JPN9 530 aa22.08■■□□□ 1.12
CLN3-204ENST00000357857 USP17L21D6R901 530 aa22.08■■□□□ 1.12
CLN3-204ENST00000357857 CHST3Q7LGC8 479 aa22.08■■□□□ 1.12
CLN3-204ENST00000357857 TEX11Q8IYF3 940 aa22.08■■□□□ 1.12
CLN3-204ENST00000357857 INTS4Q96HW7 963 aaKnown RBP22.08■■□□□ 1.12
CLN3-204ENST00000357857 MYH1P12882 1939 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms