RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 BTDP43251 543 aa26.82■■□□□ 1.88
SHMT1-203ENST00000354098 MAP1SQ66K74 1059 aaPredicted RBP26.82■■□□□ 1.88
SHMT1-203ENST00000354098 ZNF70Q9UC06 446 aaPredicted RBP26.82■■□□□ 1.88
SHMT1-203ENST00000354098 MYO1BO43795 1136 aa26.81■■□□□ 1.88
SHMT1-203ENST00000354098 CDC42EP5Q6NZY7 148 aa26.81■■□□□ 1.88
SHMT1-203ENST00000354098 MIGA1Q8NAN2 632 aa26.81■■□□□ 1.88
SHMT1-203ENST00000354098 AATFQ9NY61 560 aaKnown RBP eCLIP26.81■■□□□ 1.88
SHMT1-203ENST00000354098 TOMM70O94826 608 aa26.8■■□□□ 1.88
SHMT1-203ENST00000354098 CACNB3P54284 484 aa26.8■■□□□ 1.88
SHMT1-203ENST00000354098 SPDYE2Q495Y8 402 aa26.8■■□□□ 1.88
SHMT1-203ENST00000354098 CNTROBQ8N137 903 aa26.8■■□□□ 1.88
SHMT1-203ENST00000354098 USP40Q9NVE5 1235 aa26.8■■□□□ 1.88
SHMT1-203ENST00000354098 VEZTQ9HBM0 779 aa26.79■■□□□ 1.88
SHMT1-203ENST00000354098 RNF113AO15541 343 aaKnown RBP26.79■■□□□ 1.88
SHMT1-203ENST00000354098 DYNLL1P63167 89 aaKnown RBP26.79■■□□□ 1.88
SHMT1-203ENST00000354098 UBE3CQ15386 1083 aa26.79■■□□□ 1.88
SHMT1-203ENST00000354098 ZSCAN25Q6NSZ9 544 aa26.79■■□□□ 1.88
SHMT1-203ENST00000354098 CHADLQ6NUI6 762 aa26.79■■□□□ 1.88
SHMT1-203ENST00000354098 DCPSQ96C86 337 aaKnown RBP26.79■■□□□ 1.88
SHMT1-203ENST00000354098 SDSP20132 328 aa26.78■■□□□ 1.88
SHMT1-203ENST00000354098 RHBDL3P58872 404 aa26.78■■□□□ 1.88
SHMT1-203ENST00000354098 DLK2Q6UY11 383 aa26.78■■□□□ 1.88
SHMT1-203ENST00000354098 TMED8Q6PL24 325 aaPredicted RBP26.77■■□□□ 1.88
SHMT1-203ENST00000354098 PPP4CP60510 307 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 RBM46Q8TBY0 533 aaKnown RBP26.76■■□□□ 1.87
SHMT1-203ENST00000354098 SH3RF3Q8TEJ3 882 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-203ENST00000354098 GLIS2Q9BZE0 524 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-203ENST00000354098 PITPNM2Q9BZ72 1349 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 MYH7P12883 1935 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 TCP10L2B9ZVM9 353 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 ADM5C9JUS6 153 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 BAG3O95817 575 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 KRT26Q7Z3Y9 468 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 USP48Q86UV5 1035 aa26.76■■□□□ 1.87
SHMT1-203ENST00000354098 NOL10Q9BSC4 688 aaKnown RBP26.76■■□□□ 1.87
SHMT1-203ENST00000354098 PUS7LQ9H0K6 701 aaKnown RBP26.76■■□□□ 1.87
SHMT1-203ENST00000354098 ECM29Q5VYK3 1845 aa26.75■■□□□ 1.87
SHMT1-203ENST00000354098 ZFYP08048 801 aaPredicted RBP26.75■■□□□ 1.87
SHMT1-203ENST00000354098 NFIAQ12857 509 aa26.75■■□□□ 1.87
SHMT1-203ENST00000354098 RIOK1Q9BRS2 568 aaKnown RBP26.75■■□□□ 1.87
SHMT1-203ENST00000354098 MAGEB6P1A0A0J9YX57 407 aa26.74■■□□□ 1.87
SHMT1-203ENST00000354098 SMC1BQ8NDV3 1235 aa26.74■■□□□ 1.87
SHMT1-203ENST00000354098 OSBP2Q969R2 916 aa26.74■■□□□ 1.87
SHMT1-203ENST00000354098 POLR2AP24928 1970 aaKnown RBP26.74■■□□□ 1.87
SHMT1-203ENST00000354098 WDHD1O75717 1129 aaPredicted RBP26.73■■□□□ 1.87
SHMT1-203ENST00000354098 FMR1Q06787 632 aaKnown RBP eCLIP26.73■■□□□ 1.87
SHMT1-203ENST00000354098 LRRFIP1Q32MZ4 808 aaKnown RBP26.73■■□□□ 1.87
SHMT1-203ENST00000354098 CDC37L1Q7L3B6 337 aa26.73■■□□□ 1.87
SHMT1-203ENST00000354098 APOBEC3FQ8IUX4 373 aaKnown RBP26.73■■□□□ 1.87
SHMT1-203ENST00000354098 SULF1Q8IWU6 871 aa26.73■■□□□ 1.87
SHMT1-203ENST00000354098 APPBP2Q92624 585 aa26.73■■□□□ 1.87
SHMT1-203ENST00000354098 SEC62Q99442 399 aaKnown RBP26.73■■□□□ 1.87
SHMT1-203ENST00000354098 TMOD2Q9NZR1 351 aa26.73■■□□□ 1.87
SHMT1-203ENST00000354098 ITGBL1O95965 494 aaPredicted RBP26.73■■□□□ 1.87
SHMT1-203ENST00000354098 LCORLQ8N3X6 602 aa26.73■■□□□ 1.87
SHMT1-203ENST00000354098 TRAF5O00463 557 aa26.72■■□□□ 1.87
SHMT1-203ENST00000354098 PRAMEF18Q5VWM3 479 aa26.72■■□□□ 1.87
SHMT1-203ENST00000354098 TEX11Q8IYF3 940 aa26.72■■□□□ 1.87
SHMT1-203ENST00000354098 DEFB129Q9H1M3 183 aa26.72■■□□□ 1.87
SHMT1-203ENST00000354098 ARMT1Q9H993 441 aa26.72■■□□□ 1.87
SHMT1-203ENST00000354098 FAM198AQ9UFP1 575 aa26.72■■□□□ 1.87
SHMT1-203ENST00000354098 MBD4O95243 580 aa26.71■■□□□ 1.87
SHMT1-203ENST00000354098 TCP10Q12799 353 aa26.71■■□□□ 1.87
SHMT1-203ENST00000354098 RASA3Q14644 834 aa26.71■■□□□ 1.87
SHMT1-203ENST00000354098 ZMYM1Q5SVZ6 1142 aa26.71■■□□□ 1.87
SHMT1-203ENST00000354098 DDX4Q9NQI0 724 aaKnown RBP26.71■■□□□ 1.87
SHMT1-203ENST00000354098 CNTNAP1P78357 1384 aa26.71■■□□□ 1.87
SHMT1-203ENST00000354098 M0R2C6 588 aa26.7■■□□□ 1.87
SHMT1-203ENST00000354098 PLCG2P16885 1265 aa26.7■■□□□ 1.87
SHMT1-203ENST00000354098 PICALMQ13492 652 aa26.7■■□□□ 1.87
SHMT1-203ENST00000354098 ZFPM1Q8IX07 1006 aa26.7■■□□□ 1.87
SHMT1-203ENST00000354098 FAM227BQ96M60 508 aa26.7■■□□□ 1.87
SHMT1-203ENST00000354098 IDI2Q9BXS1 227 aa26.7■■□□□ 1.87
SHMT1-203ENST00000354098 BMP2KLQ5H9B9 411 aa26.7■■□□□ 1.86
SHMT1-203ENST00000354098 FKBP1CQ5VVH2 108 aa26.7■■□□□ 1.86
SHMT1-203ENST00000354098 RFX7Q2KHR2 1363 aa26.69■■□□□ 1.86
SHMT1-203ENST00000354098 NMIQ13287 307 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-203ENST00000354098 TNFAIP1Q13829 316 aa26.69■■□□□ 1.86
SHMT1-203ENST00000354098 TGFBRAP1Q8WUH2 860 aa26.69■■□□□ 1.86
SHMT1-203ENST00000354098 AIDAQ96BJ3 306 aa26.69■■□□□ 1.86
SHMT1-203ENST00000354098 TMEM39BQ9GZU3 492 aa26.69■■□□□ 1.86
SHMT1-203ENST00000354098 AK9Q5TCS8 1911 aa26.69■■□□□ 1.86
SHMT1-203ENST00000354098 A0A0D9SFI3 127 aa26.68■■□□□ 1.86
SHMT1-203ENST00000354098 TICAM2Q86XR7 235 aa26.68■■□□□ 1.86
SHMT1-203ENST00000354098 CDAN1Q8IWY9 1227 aa26.68■■□□□ 1.86
SHMT1-203ENST00000354098 FSTL1Q12841 308 aa26.67■■□□□ 1.86
SHMT1-203ENST00000354098 PRKAB2O43741 272 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 TNNI2P48788 182 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 CCDC129Q6ZRS4 1044 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 FAM83AQ86UY5 434 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 CERS3Q8IU89 383 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 MAPKAPK5Q8IW41 473 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 STRBPQ96SI9 672 aaKnown RBP26.66■■□□□ 1.86
SHMT1-203ENST00000354098 GPAA1O43292 621 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 SDR42E1Q8WUS8 393 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 FAM151AQ8WW52 585 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 CDCA5Q96FF9 252 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 TEPSINQ96N21 525 aa26.66■■□□□ 1.86
SHMT1-203ENST00000354098 CWC27Q6UX04 472 aaKnown RBP26.65■■□□□ 1.86
SHMT1-203ENST00000354098 CRNKL1Q9BZJ0 848 aaKnown RBP26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms