RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PSME1Q06323 249 aa16.47■□□□□ 0.23
SDC1-201ENST00000254351 TMEM139Q8IV31 216 aa16.47■□□□□ 0.23
SDC1-201ENST00000254351 XAGE3Q8WTP9 111 aa16.47■□□□□ 0.23
SDC1-201ENST00000254351 ALDH8A1Q9H2A2 487 aaPredicted RBP16.47■□□□□ 0.23
SDC1-201ENST00000254351 CBFA2T2O43439 604 aa16.47■□□□□ 0.23
SDC1-201ENST00000254351 AKAP17AQ02040 695 aaKnown RBP16.47■□□□□ 0.23
SDC1-201ENST00000254351 NEXNQ0ZGT2 675 aa16.47■□□□□ 0.23
SDC1-201ENST00000254351 TTC31Q49AM3 519 aaPredicted RBP16.47■□□□□ 0.23
SDC1-201ENST00000254351 AXDND1Q5T1B0 1012 aaPredicted RBP16.47■□□□□ 0.23
SDC1-201ENST00000254351 FKBP15Q5T1M5 1219 aa16.47■□□□□ 0.23
SDC1-201ENST00000254351 SHC4Q6S5L8 630 aa16.47■□□□□ 0.23
SDC1-201ENST00000254351 EIF3CLB5ME19 914 aaKnown RBP16.46■□□□□ 0.23
SDC1-201ENST00000254351 FMR1Q06787 632 aaKnown RBP eCLIP16.46■□□□□ 0.23
SDC1-201ENST00000254351 HSP90B2PQ58FF3 399 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 RSRC2Q7L4I2 434 aaKnown RBP16.46■□□□□ 0.23
SDC1-201ENST00000254351 GOLGA6L1Q8N7Z2 621 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 EXOC4Q96A65 974 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 EIF3CQ99613 913 aaKnown RBP16.46■□□□□ 0.23
SDC1-201ENST00000254351 UBXN6Q9BZV1 441 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 DCCP43146 1447 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 ATP5JP18859 108 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 IBSPP21815 317 aaPredicted RBP16.46■□□□□ 0.23
SDC1-201ENST00000254351 CASP1P29466 404 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 VSNL1P62760 191 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 TC2NQ8N9U0 490 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 RABGGTAQ92696 567 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 KIFC2Q96AC6 838 aa16.46■□□□□ 0.23
SDC1-201ENST00000254351 A0A1W2PQ27 194 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 A0A1W2PQ64 194 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 A0A1W2PQD8 194 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 BMP6P22004 513 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 C1orf141Q5JVX7 400 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 ZNF594Q96JF6 807 aaPredicted RBP16.45■□□□□ 0.22
SDC1-201ENST00000254351 ANKZF1Q9H8Y5 726 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 ATG3Q9NT62 314 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 AKAP2Q9Y2D5 859 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 TEX33O43247 280 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 ZNF335Q9H4Z2 1342 aaPredicted RBP16.45■□□□□ 0.22
SDC1-201ENST00000254351 EXOSC10Q01780 885 aaKnown RBP16.45■□□□□ 0.22
SDC1-201ENST00000254351 GRIN1Q05586 938 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 TTC19Q6DKK2 380 aaPredicted RBP16.45■□□□□ 0.22
SDC1-201ENST00000254351 METTL16Q86W50 562 aaKnown RBP16.45■□□□□ 0.22
SDC1-201ENST00000254351 MICU3Q86XE3 530 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 PAG1Q9NWQ8 432 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 JRKLQ9Y4A0 524 aa16.45■□□□□ 0.22
SDC1-201ENST00000254351 FAM208AQ9UK61 1670 aaKnown RBP16.44■□□□□ 0.22
SDC1-201ENST00000254351 PRC1O43663 620 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 DDX58O95786 925 aaKnown RBP16.44■□□□□ 0.22
SDC1-201ENST00000254351 FAM204AQ9H8W3 233 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 M0R2C6 588 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 HMGB1P09429 215 aaKnown RBP16.44■□□□□ 0.22
SDC1-201ENST00000254351 PRR29P0C7W0 189 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 PTPN12Q05209 780 aaKnown RBP16.44■□□□□ 0.22
SDC1-201ENST00000254351 ICE2Q659A1 982 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 NCAPH2Q6IBW4 605 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 ACRBPQ8NEB7 543 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 PHF8Q9UPP1 1060 aa16.44■□□□□ 0.22
SDC1-201ENST00000254351 CMA1P23946 247 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 BEND6Q5SZJ8 279 aaPredicted RBP16.43■□□□□ 0.22
SDC1-201ENST00000254351 GSPT2Q8IYD1 628 aaKnown RBP16.43■□□□□ 0.22
SDC1-201ENST00000254351 SMYD4Q8IYR2 804 aaPredicted RBP16.43■□□□□ 0.22
SDC1-201ENST00000254351 MICALL1Q8N3F8 863 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 TFR2Q9UP52 801 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 PXDNLA1KZ92 1463 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 CUTAO60888 179 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 SPECC1LQ69YQ0 1117 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 HDXQ7Z353 690 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 VPS37DQ86XT2 251 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 KBTBD3Q8NAB2 608 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 USP31Q70CQ4 1352 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 NEURL1BA8MQ27 555 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 ENC1O14682 589 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 MRPS25P82663 173 aaKnown RBP16.43■□□□□ 0.22
SDC1-201ENST00000254351 KIF23Q02241 960 aaPredicted RBP16.43■□□□□ 0.22
SDC1-201ENST00000254351 GCKRQ14397 625 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 TAF7LQ5H9L4 462 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 LMBR1LQ6UX01 489 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 RAD9BQ6WBX8 426 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 NOA1Q8NC60 698 aaKnown RBP16.43■□□□□ 0.22
SDC1-201ENST00000254351 BPIFA3Q9BQP9 254 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 ALG1Q9BT22 464 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 POLD4Q9HCU8 107 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 POLR3EQ9NVU0 708 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 RAI14Q9P0K7 980 aa16.43■□□□□ 0.22
SDC1-201ENST00000254351 A0A087WZG4 1122 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 CCDC151A5D8V7 595 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 IKBKBO14920 756 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 NOM1Q5C9Z4 860 aaKnown RBP16.42■□□□□ 0.22
SDC1-201ENST00000254351 DNAJC21Q5F1R6 531 aaKnown RBP16.42■□□□□ 0.22
SDC1-201ENST00000254351 CMTR1Q8N1G2 835 aaKnown RBP16.42■□□□□ 0.22
SDC1-201ENST00000254351 EFCC1Q9HA90 598 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 INCENPQ9NQS7 918 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 SALL1Q9NSC2 1324 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 A0A1B0GUL7 405 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 KIF5CO60282 957 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 CCDC175P0C221 793 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 CASP8Q14790 479 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 CCDC102BQ68D86 513 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 SRGAP1Q7Z6B7 1085 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 SLC35F6Q8N357 371 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms