RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 HAND2P61296 217 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 STX1AQ16623 288 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 FKBP15Q5T1M5 1219 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 MED23Q9ULK4 1368 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 SERPINC1P01008 464 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 NAPAP54920 295 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 CETN1Q12798 172 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 HELBQ8NG08 1087 aaPredicted RBP15.66■□□□□ 0.1
LDLR-201ENST00000252444 DHX36Q9H2U1 1008 aaKnown RBP15.66■□□□□ 0.1
LDLR-201ENST00000252444 VEZTQ9HBM0 779 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 TNNQ9UQP3 1299 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 SPDYE3A6NKU9 549 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 SPAG1Q07617 926 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 CCDC150Q8NCX0 1101 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 ACBD3Q9H3P7 528 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 MYOM1P52179 1685 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 ZNF532Q9HCE3 1301 aa15.66■□□□□ 0.1
LDLR-201ENST00000252444 PICALMQ13492 652 aa15.65■□□□□ 0.1
LDLR-201ENST00000252444 ZNF274Q96GC6 653 aaPredicted RBP15.65■□□□□ 0.1
LDLR-201ENST00000252444 SLIT3O75094 1523 aa15.65■□□□□ 0.1
LDLR-201ENST00000252444 UBA7P41226 1012 aa15.65■□□□□ 0.1
LDLR-201ENST00000252444 RILPL1Q5EBL4 403 aa15.65■□□□□ 0.1
LDLR-201ENST00000252444 CT47A1Q5JQC4 288 aaPredicted RBP15.65■□□□□ 0.1
LDLR-201ENST00000252444 MED1Q15648 1581 aaPredicted RBP15.65■□□□□ 0.1
LDLR-201ENST00000252444 TRIM75PA6NK02 468 aa15.65■□□□□ 0.1
LDLR-201ENST00000252444 TIMM10P62072 90 aa15.65■□□□□ 0.1
LDLR-201ENST00000252444 ODF2Q5BJF6 829 aa15.64■□□□□ 0.09
LDLR-201ENST00000252444 AKNAD1Q5T1N1 836 aa15.64■□□□□ 0.09
LDLR-201ENST00000252444 CNNM3Q8NE01 707 aa15.64■□□□□ 0.09
LDLR-201ENST00000252444 COL5A2P05997 1499 aaPredicted RBP15.64■□□□□ 0.09
LDLR-201ENST00000252444 KRT25Q7Z3Z0 450 aa15.64■□□□□ 0.09
LDLR-201ENST00000252444 F13A1P00488 732 aa15.64■□□□□ 0.09
LDLR-201ENST00000252444 ZAP70P43403 619 aa15.64■□□□□ 0.09
LDLR-201ENST00000252444 WDR19Q8NEZ3 1342 aa15.64■□□□□ 0.09
LDLR-201ENST00000252444 CCT2P78371 535 aaKnown RBP15.63■□□□□ 0.09
LDLR-201ENST00000252444 CRAMP1Q96RY5 1269 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 CHURC1Q8WUH1 139 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 KLHL40Q2TBA0 621 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 MFSD14BQ5SR56 506 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 ZMYM1Q5SVZ6 1142 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 ZNF594Q96JF6 807 aaPredicted RBP15.63■□□□□ 0.09
LDLR-201ENST00000252444 GREM2Q9H772 168 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 RABGAP1Q9Y3P9 1069 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 CEBPZQ03701 1054 aaKnown RBP15.63■□□□□ 0.09
LDLR-201ENST00000252444 IQCEQ6IPM2 695 aa15.63■□□□□ 0.09
LDLR-201ENST00000252444 ZBED4O75132 1171 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 PDE6AP16499 860 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 HOMER1Q86YM7 354 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 HSPA1LP34931 641 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 PPARAQ07869 468 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 DALRD3Q5D0E6 543 aaKnown RBP15.62■□□□□ 0.09
LDLR-201ENST00000252444 VPS36Q86VN1 386 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 SLC5A4Q9NY91 659 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 RCAN1P53805 252 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 FAM177A1Q8N128 213 aaPredicted RBP15.62■□□□□ 0.09
LDLR-201ENST00000252444 CTAGE1Q96RT6 745 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 FAM208AQ9UK61 1670 aaKnown RBP15.62■□□□□ 0.09
LDLR-201ENST00000252444 CCDC172P0C7W6 258 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 AK2P54819 239 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 ERFEQ4G0M1 354 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 TSHZ3Q63HK5 1081 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 FSIP1Q8NA03 581 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 ARGLU1Q9NWB6 273 aaPredicted RBP15.62■□□□□ 0.09
LDLR-201ENST00000252444 CLEC11AQ9Y240 323 aa15.62■□□□□ 0.09
LDLR-201ENST00000252444 CDR1P51861 262 aa15.61■□□□□ 0.09
LDLR-201ENST00000252444 PROSER3Q2NL68 480 aa15.61■□□□□ 0.09
LDLR-201ENST00000252444 BRIP1Q9BX63 1249 aa15.61■□□□□ 0.09
LDLR-201ENST00000252444 ARMT1Q9H993 441 aa15.61■□□□□ 0.09
LDLR-201ENST00000252444 TTLL6Q8N841 843 aa15.61■□□□□ 0.09
LDLR-201ENST00000252444 MIGA1Q8NAN2 632 aa15.61■□□□□ 0.09
LDLR-201ENST00000252444 MRPS27Q92552 414 aaKnown RBP15.61■□□□□ 0.09
LDLR-201ENST00000252444 ZNF512BQ96KM6 892 aaPredicted RBP15.61■□□□□ 0.09
LDLR-201ENST00000252444 F8W031 263 aaPredicted RBP15.61■□□□□ 0.09
LDLR-201ENST00000252444 TBCAO75347 108 aaKnown RBP15.61■□□□□ 0.09
LDLR-201ENST00000252444 SNX14Q9Y5W7 946 aa15.61■□□□□ 0.09
LDLR-201ENST00000252444 USP14P54578 494 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 HEATR3Q7Z4Q2 680 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 TTLL11Q8NHH1 800 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 ERCC4Q92889 916 aaPredicted RBP15.6■□□□□ 0.09
LDLR-201ENST00000252444 AKAP12Q02952 1782 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 PLCD1P51178 756 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 GSDMDP57764 484 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 EAF2Q96CJ1 260 aaPredicted RBP15.6■□□□□ 0.09
LDLR-201ENST00000252444 UTYO14607 1347 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 PTPDC1A2A3K4 754 aa15.6■□□□□ 0.09
LDLR-201ENST00000252444 RABL6Q3YEC7 729 aaPredicted RBP15.6■□□□□ 0.09
LDLR-201ENST00000252444 IQSEC3Q9UPP2 1182 aaPredicted RBP15.6■□□□□ 0.09
LDLR-201ENST00000252444 SSBP05455 408 aaKnown RBP eCLIP15.6■□□□□ 0.09
LDLR-201ENST00000252444 TTF2Q9UNY4 1162 aaKnown RBP15.6■□□□□ 0.09
LDLR-201ENST00000252444 MAP2P11137 1827 aaKnown RBP15.6■□□□□ 0.09
LDLR-201ENST00000252444 SP8Q8IXZ3 490 aa15.59■□□□□ 0.09
LDLR-201ENST00000252444 KDM4AO75164 1064 aa15.59■□□□□ 0.09
LDLR-201ENST00000252444 USP40Q9NVE5 1235 aa15.59■□□□□ 0.09
LDLR-201ENST00000252444 PTPN12Q05209 780 aaKnown RBP15.59■□□□□ 0.09
LDLR-201ENST00000252444 ARHGEF6Q15052 776 aa15.59■□□□□ 0.09
LDLR-201ENST00000252444 PIM2Q9P1W9 311 aa15.59■□□□□ 0.09
LDLR-201ENST00000252444 TXNRD1Q16881 649 aa15.59■□□□□ 0.09
LDLR-201ENST00000252444 SF3B3Q15393 1217 aaKnown RBP15.58■□□□□ 0.09
LDLR-201ENST00000252444 KRT79Q5XKE5 535 aa15.58■□□□□ 0.09
LDLR-201ENST00000252444 SUPT20HL1Q3ZLR7 823 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms