RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 NLRP3Q96P20 1036 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 EXOC1Q9NV70 894 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 TXNDC16Q9P2K2 825 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 POLIQ9UNA4 740 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 OAS2P29728 719 aaKnown RBP12.43□□□□□ -0.42
MSH6-201ENST00000234420 GSTO1P78417 241 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 CCDC62Q6P9F0 684 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 KCNH5Q8NCM2 988 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 SPDYE2BA6NHP3 402 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 SPDYE6P0CI01 402 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 BZW2Q9Y6E2 419 aaKnown RBP12.43□□□□□ -0.42
MSH6-201ENST00000234420 STAG1Q8WVM7 1258 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 DNAJC25Q9H1X3 360 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 SH2B1Q9NRF2 756 aaPredicted RBP12.43□□□□□ -0.42
MSH6-201ENST00000234420 SLC4A4Q9Y6R1 1079 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 LRRD1A4D1F6 860 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 E7EVH7 732 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 KRT19P08727 400 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 ANKFY1Q9P2R3 1169 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 FAM193BQ96PV7 902 aaPredicted RBP12.43□□□□□ -0.42
MSH6-201ENST00000234420 AMOTL2Q9Y2J4 779 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 ELF2Q15723 593 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 TSHZ3Q63HK5 1081 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 ZNF467Q7Z7K2 595 aaPredicted RBP12.43□□□□□ -0.42
MSH6-201ENST00000234420 FCHSD1Q86WN1 690 aa12.43□□□□□ -0.42
MSH6-201ENST00000234420 CACYBPQ9HB71 228 aaKnown RBP12.43□□□□□ -0.42
MSH6-201ENST00000234420 AQRO60306 1485 aaKnown RBP eCLIP12.42□□□□□ -0.428e-7■■■■□ 22.6
MSH6-201ENST00000234420 LIG3P49916 1009 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 SLC39A6Q13433 755 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 PPP1R7Q15435 360 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 ANLNQ9NQW6 1124 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 SFMBT1Q9UHJ3 866 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 MTUS1Q9ULD2 1270 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.42□□□□□ -0.42
MSH6-201ENST00000234420 H0YIN7 160 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 KRT86O43790 486 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 BRDTQ58F21 947 aaPredicted RBP12.42□□□□□ -0.42
MSH6-201ENST00000234420 MTRF1LQ9UGC7 380 aaKnown RBP12.42□□□□□ -0.42
MSH6-201ENST00000234420 LIMCH1Q9UPQ0 1083 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 TRAPPC3LQ5T215 181 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 RYBPQ8N488 228 aaPredicted RBP12.42□□□□□ -0.42
MSH6-201ENST00000234420 NAPAP54920 295 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 ZNF513Q8N8E2 541 aaPredicted RBP12.42□□□□□ -0.42
MSH6-201ENST00000234420 ZNF692Q9BU19 519 aaPredicted RBP12.42□□□□□ -0.42
MSH6-201ENST00000234420 PHAXQ9H814 394 aaKnown RBP12.42□□□□□ -0.42
MSH6-201ENST00000234420 JAKMIP2Q96AA8 810 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 PLEKHH1Q9ULM0 1364 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 TUBB4BP68371 445 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 ITKQ08881 620 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 ERO1AQ96HE7 468 aa12.42□□□□□ -0.42
MSH6-201ENST00000234420 B4DLN1 442 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 BAG2O95816 211 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 MRPL12P52815 198 aaKnown RBP12.41□□□□□ -0.42
MSH6-201ENST00000234420 CCDC102BQ68D86 513 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 UBE3BQ7Z3V4 1068 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 FAM169AQ9Y6X4 670 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 GIGYF1O75420 1035 aaPredicted RBP12.41□□□□□ -0.42
MSH6-201ENST00000234420 BAZ1AQ9NRL2 1556 aaPredicted RBP12.41□□□□□ -0.42
MSH6-201ENST00000234420 CAVIN2O95810 425 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 SLC4A1P02730 911 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 WDR48Q8TAF3 677 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 LRRC2Q9BYS8 371 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 SPC25Q9HBM1 224 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 INPP1P49441 399 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 RNF8O76064 485 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 DCAF17Q5H9S7 520 aaPredicted RBP12.41□□□□□ -0.42
MSH6-201ENST00000234420 RBM46Q8TBY0 533 aaKnown RBP12.41□□□□□ -0.42
MSH6-201ENST00000234420 ZBED2Q9BTP6 218 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 CNPY2Q9Y2B0 182 aa12.41□□□□□ -0.42
MSH6-201ENST00000234420 VCX3AQ9NNX9 186 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 ATF5Q9Y2D1 282 aaPredicted RBP12.4□□□□□ -0.42
MSH6-201ENST00000234420 CCDC88BA6NC98 1476 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 FANCD2Q9BXW9 1451 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 IGBP1P78318 339 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 ARHGAP24Q8N264 748 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 ERBINQ96RT1 1412 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 NEK11Q8NG66 645 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 MAP3K7CLP57077 242 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 RASEFQ8IZ41 740 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 APOL6Q9BWW8 343 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 OLA1Q9NTK5 396 aaKnown RBP12.4□□□□□ -0.42
MSH6-201ENST00000234420 BRD4O60885 1362 aaPredicted RBP12.4□□□□□ -0.42
MSH6-201ENST00000234420 HIP1RO75146 1068 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 SH3BGRP55822 239 aaPredicted RBP12.4□□□□□ -0.42
MSH6-201ENST00000234420 ARPP19P56211 112 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 SKOR1P84550 965 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 RRAGBQ5VZM2 374 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 TRIM35Q9UPQ4 493 aa12.4□□□□□ -0.42
MSH6-201ENST00000234420 MX1P20591 662 aa12.4□□□□□ -0.43
MSH6-201ENST00000234420 STAT6P42226 847 aa12.4□□□□□ -0.43
MSH6-201ENST00000234420 RBM17Q96I25 401 aaKnown RBP12.4□□□□□ -0.43
MSH6-201ENST00000234420 CTAGE1Q96RT6 745 aa12.4□□□□□ -0.43
MSH6-201ENST00000234420 MOSPD1Q9UJG1 213 aa12.4□□□□□ -0.43
MSH6-201ENST00000234420 LDHCP07864 332 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 POLE2P56282 527 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 KRT83P78385 493 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 ACBD5Q5T8D3 534 aaPredicted RBP12.39□□□□□ -0.43
MSH6-201ENST00000234420 SYKP43405 635 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 USP48Q86UV5 1035 aa12.39□□□□□ -0.43
MSH6-201ENST00000234420 ZKSCAN3Q9BRR0 538 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms