RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 BPIFCQ8NFQ6 507 aa14.79□□□□□ -0.04
CLK3-225ENST00000569063 ZNF431Q8TF32 576 aaPredicted RBP14.79□□□□□ -0.04
CLK3-225ENST00000569063 FNDC10F2Z333 226 aa14.78□□□□□ -0.04
CLK3-225ENST00000569063 TSC22D2O75157 780 aa14.78□□□□□ -0.04
CLK3-225ENST00000569063 GATA2P23769 480 aaPredicted RBP14.78□□□□□ -0.04
CLK3-225ENST00000569063 DLK1P80370 383 aa14.78□□□□□ -0.04
CLK3-225ENST00000569063 WDR12Q9GZL7 423 aaKnown RBP14.78□□□□□ -0.04
CLK3-225ENST00000569063 RCL1Q9Y2P8 373 aaKnown RBP14.78□□□□□ -0.04
CLK3-225ENST00000569063 H3BMM0 161 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 SOCS3O14543 225 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 CCNKO75909 580 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 MBPP02686 304 aaPredicted RBP14.77□□□□□ -0.05
CLK3-225ENST00000569063 H2AFB2P0C5Z0 115 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 METTL15P1P0C7V9 234 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 ID1P41134 155 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 PSMB3P49720 205 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 CEMP1Q6PRD7 247 aaPredicted RBP14.77□□□□□ -0.05
CLK3-225ENST00000569063 OR10P1Q8NGE3 313 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 SEC22CQ9BRL7 303 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 TBC1D24Q9ULP9 559 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 RYR2Q92736 4967 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 AGRNO00468 2067 aa14.77□□□□□ -0.05
CLK3-225ENST00000569063 FAM240BA0A1B0GVZ2 78 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 SMCO3A2RU48 225 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 ZNF98A6NK75 572 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 CCSO14618 274 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 ORM2P19652 201 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 S100A7P31151 101 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 ZNF846Q147U1 533 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 SAMD13Q5VXD3 122 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 MZT2BQ6NZ67 158 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 CYP2G1PQ6ZSU1 146 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 CSNK1G2-AS1Q8NCQ2 148 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 NPVFQ9HCQ7 196 aa14.76□□□□□ -0.05
CLK3-225ENST00000569063 C7orf66A4D0T2 115 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 ZNF705EA8MWA4 302 aaPredicted RBP14.75□□□□□ -0.05
CLK3-225ENST00000569063 ISLRO14498 428 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 IL5P05113 134 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 HLA-DRB4P13762 266 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 NUTF2P61970 127 aaKnown RBP14.75□□□□□ -0.05
CLK3-225ENST00000569063 ASAH1Q13510 395 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 C12orf45Q8N5I9 185 aaPredicted RBP14.75□□□□□ -0.05
CLK3-225ENST00000569063 Q8NAQ8 132 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 OR1B1Q8NGR6 318 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 TMEM147Q9BVK8 224 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 SLC25A32Q9H2D1 315 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 HLA-DRB4X5D2U9 266 aa14.75□□□□□ -0.05
CLK3-225ENST00000569063 GALR1P47211 349 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 MEOX2P50222 304 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 PLP1P60201 277 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 RRAS2P62070 204 aaPredicted RBP14.74□□□□□ -0.05
CLK3-225ENST00000569063 SELENOTP62341 195 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 C11orf45Q8TAV5 145 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 LINC00052Q96N35 136 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 GPR82Q96P67 336 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 GGACTQ9BVM4 153 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 C1QTNF4Q9BXJ3 329 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 MFFQ9GZY8 342 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 SAV1Q9H4B6 383 aaPredicted RBP14.74□□□□□ -0.05
CLK3-225ENST00000569063 SLC25A22Q9H936 323 aa14.74□□□□□ -0.05
CLK3-225ENST00000569063 FAM25EA8MYX2 175 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 K7EPK0 472 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 MIFP14174 115 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 FOXI2Q6ZQN5 318 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 CLUHP3Q96NS8 147 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 CLEC5AQ9NY25 188 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 MGAT4CQ9UBM8 478 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 KLK5Q9Y337 293 aaPredicted RBP14.73□□□□□ -0.05
CLK3-225ENST00000569063 X6R8D5 127 aa14.73□□□□□ -0.05
CLK3-225ENST00000569063 C5orf51A6NDU8 294 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 DEFB4AO15263 64 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 ARL16Q0P5N6 197 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 GDF5OSQ5U4N7 250 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 TEPPQ6URK8 271 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 PHLDA1Q8WV24 401 aaPredicted RBP14.72□□□□□ -0.05
CLK3-225ENST00000569063 C2orf50Q96LR7 162 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 C17orf77Q96MU5 243 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 RSG1Q9BU20 258 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 SLC25A39Q9BZJ4 359 aaPredicted RBP14.72□□□□□ -0.05
CLK3-225ENST00000569063 PTTG2Q9NZH5 202 aa14.72□□□□□ -0.05
CLK3-225ENST00000569063 H3BRN7 92 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 L7N2F9 121 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 HYPMO75409 117 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 DEDDO75618 318 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 UPK1BO75841 260 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 LINC00869P0C866 280 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 RBMY1A1P0DJD3 496 aaKnown RBP14.71□□□□□ -0.05
CLK3-225ENST00000569063 RBMY1CP0DJD4 496 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 DEFB1P60022 68 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 NANOS2P60321 138 aaKnown RBP14.71□□□□□ -0.05
CLK3-225ENST00000569063 VAMP2P63027 116 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 RBMY1FQ15415 496 aaKnown RBP14.71□□□□□ -0.05
CLK3-225ENST00000569063 SPATA31B1PQ5VZV4 182 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 SHANK2-AS3Q9BTD1 123 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 SCRT1Q9BWW7 348 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 DOK5Q9P104 306 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 HIGD1AQ9Y241 93 aa14.71□□□□□ -0.05
CLK3-225ENST00000569063 IGHV4-28A0A0C4DH34 117 aa14.7□□□□□ -0.06
CLK3-225ENST00000569063 RAP2BP61225 183 aa14.7□□□□□ -0.06
CLK3-225ENST00000569063 GSG1LQ6UXU4 331 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms