RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RAB31Q13636 194 aa12.94□□□□□ -0.34
CLN3-217ENST00000565354 ATP6V1FQ16864 119 aa12.94□□□□□ -0.34
CLN3-217ENST00000565354 NEURL2Q9BR09 285 aa12.94□□□□□ -0.34
CLN3-217ENST00000565354 UBE2L5PA0A1B0GUS4 154 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 DNASE2O00115 360 aaPredicted RBP12.93□□□□□ -0.34
CLN3-217ENST00000565354 DFFBO76075 338 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 ORM2P19652 201 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 GATA2P23769 480 aaPredicted RBP12.93□□□□□ -0.34
CLN3-217ENST00000565354 TFPI2P48307 235 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 SELENOTP62341 195 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 BAXQ07812 192 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 FGL1Q08830 312 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 OR1B1Q8NGR6 318 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 ASB13Q8WXK3 278 aa12.93□□□□□ -0.34
CLN3-217ENST00000565354 CD7P09564 240 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 GIPP09681 153 aaPredicted RBP12.92□□□□□ -0.34
CLN3-217ENST00000565354 LINC00869P0C866 280 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 NHLH2Q02577 135 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 ZNF546Q86UE3 836 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 SBSPONQ8IVN8 264 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 GBGT1Q8N5D6 347 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 OR5C1Q8NGR4 320 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 RNF126Q9BV68 326 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 TUBA4BQ9H853 241 aa12.92□□□□□ -0.34
CLN3-217ENST00000565354 HELTA6NFD8 242 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 AGPAT2O15120 278 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 RPL12P30050 165 aaKnown RBP12.91□□□□□ -0.34
CLN3-217ENST00000565354 RAP2BP61225 183 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 C16orf54Q6UWD8 224 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 S100A7AQ86SG5 101 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 WFDC3Q8IUB2 231 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 STXBP6Q8NFX7 210 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 DOK5Q9P104 306 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 U3KQE9 123 aa12.91□□□□□ -0.34
CLN3-217ENST00000565354 OR5G3P0C626 314 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 FGF7P21781 194 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 CAMLGP49069 296 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 AP2S1P53680 142 aaPredicted RBP12.9□□□□□ -0.34
CLN3-217ENST00000565354 CLINT1Q14677 625 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 FAM90A2PQ658T7 463 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 TMEM182Q6ZP80 229 aaPredicted RBP12.9□□□□□ -0.34
CLN3-217ENST00000565354 Q8N1Y9 231 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 MGST2Q99735 147 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 WDR83OSQ9Y284 106 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 HSPB11Q9Y547 144 aa12.9□□□□□ -0.34
CLN3-217ENST00000565354 OR11H12B2RN74 326 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 HYPMO75409 117 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 IGHV4-30-4P0DP06 118 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 VWC2Q2TAL6 325 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 SIGLEC15Q6ZMC9 328 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 CITED4Q96RK1 184 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 ARL6Q9H0F7 186 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 MS4A6AQ9H2W1 248 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 FBXL17Q9UF56 701 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 UBQLN2Q9UHD9 624 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 SLC45A2Q9UMX9 530 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 HIGD1AQ9Y241 93 aa12.89□□□□□ -0.35
CLN3-217ENST00000565354 BUB3O43684 328 aa12.88□□□□□ -0.35
CLN3-217ENST00000565354 CMC4P56277 68 aaPredicted RBP12.88□□□□□ -0.35
CLN3-217ENST00000565354 ZFAND6Q6FIF0 208 aa12.88□□□□□ -0.35
CLN3-217ENST00000565354 Q6ZRG5 221 aa12.88□□□□□ -0.35
CLN3-217ENST00000565354 OR8I2Q8N0Y5 310 aa12.88□□□□□ -0.35
CLN3-217ENST00000565354 GLMPQ8WWB7 406 aa12.88□□□□□ -0.35
CLN3-217ENST00000565354 SMIM3Q9BZL3 60 aa12.88□□□□□ -0.35
CLN3-217ENST00000565354 SLC25A22Q9H936 323 aa12.88□□□□□ -0.35
CLN3-217ENST00000565354 MPDU1O75352 247 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 PXDC1Q5TGL8 231 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 DEFB125Q8N687 156 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 OR2T35Q8NGX2 323 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 ATP5SQ99766 215 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 WFDC10AQ9H1F0 79 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 ZMAT4Q9H898 229 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 SRD5A3Q9H8P0 318 aa12.87□□□□□ -0.35
CLN3-217ENST00000565354 TRAV2A0A0B4J234 112 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 COX7A2P2O60397 106 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 IFNA5P01569 189 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 FRMD6-AS1P0C7T7 363 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 PLP1P60201 277 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 C1orf194Q5T5A4 169 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 MIC13Q5XKP0 118 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 ZNF709Q8N972 641 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 GGTLC1Q9BX51 225 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 KRTAP17-1Q9BYP8 105 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 RNF24Q9Y225 148 aa12.86□□□□□ -0.35
CLN3-217ENST00000565354 FXYD6-FXYD2A0A087WZ82 144 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 ZNF98A6NK75 572 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 GALR1P47211 349 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 OPCMLQ14982 345 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 STPG3Q8N7X2 389 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 INO80EQ8NBZ0 244 aaPredicted RBP12.85□□□□□ -0.35
CLN3-217ENST00000565354 OR1L4Q8NGR5 311 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 SCGB1C1Q8TD33 95 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 SLC25A39Q9BZJ4 359 aaPredicted RBP12.85□□□□□ -0.35
CLN3-217ENST00000565354 ARV1Q9H2C2 271 aa12.85□□□□□ -0.35
CLN3-217ENST00000565354 HYDINQ4G0P3 5121 aa12.84□□□□□ -0.35
CLN3-217ENST00000565354 C17orf112F2Z3M2 114 aa12.84□□□□□ -0.35
CLN3-217ENST00000565354 H3BRN7 92 aa12.84□□□□□ -0.35
CLN3-217ENST00000565354 RPL29P47914 159 aaKnown RBP12.84□□□□□ -0.35
CLN3-217ENST00000565354 B2MP61769 119 aa12.84□□□□□ -0.35
CLN3-217ENST00000565354 NPCDR1Q9BY65 106 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms