RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PSMG3Q9BT73 122 aaPredicted RBP5.69□□□□□ -1.5
CD44-228ENST00000528455 ZNF471Q9BX82 626 aaPredicted RBP5.69□□□□□ -1.5
CD44-228ENST00000528455 WI2-2373I1.2A0A1W2PRP0 233 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 OR2T8A6NH00 312 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 TGOLN2O43493 480 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 OR2C1O95371 312 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 MBP02144 154 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 LINC00869P0C866 280 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 PSG1P11464 419 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 FGF7P21781 194 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 ATP6V0CP27449 155 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 ARL3P36405 182 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 PLP1P60201 277 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 FAM106AQ4KMX7 169 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 ZNF600Q6ZNG1 722 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 CYP2G1PQ6ZSU1 146 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 S100A7AQ86SG5 101 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 NDUFA11Q86Y39 141 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 BPIFCQ8NFQ6 507 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 OR2G3Q8NGZ4 309 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 IL17DQ8TAD2 202 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 CITED1Q99966 193 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 CITED2Q99967 270 aaPredicted RBP5.68□□□□□ -1.5
CD44-228ENST00000528455 NPCDR1Q9BY65 106 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 DNAJC4Q9NNZ3 241 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 KCNIP2Q9NS61 270 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 S4R3C0 116 aa5.68□□□□□ -1.5
CD44-228ENST00000528455 UBE2L5PA0A1B0GUS4 154 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 UMAD1C9J7I0 102 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 K7EMT4 169 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 NDUFA4O00483 81 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 TOMM40O96008 361 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 IGHV3-11P01762 117 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 IGHV3-23P01764 117 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 ZP3P21754 424 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 S100A7P31151 101 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 GPR183P32249 361 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 RAB5CP51148 216 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 PTTG1IPP53801 180 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 KRTAP10-3P60369 221 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 ZNF90Q03938 601 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 ZNF616Q08AN1 781 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 TIGITQ495A1 244 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 TEX261Q6UWH6 196 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 TMEM182Q6ZP80 229 aaPredicted RBP5.67□□□□□ -1.5
CD44-228ENST00000528455 HSD17B11Q8NBQ5 300 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 OR51G1Q8NGK1 321 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 OR1N2Q8NGR9 330 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 DPF1Q92782 380 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 CHRDL1Q9BU40 450 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 GGTLC1Q9BX51 225 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 GNB4Q9HAV0 340 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 SLC39A9Q9NUM3 307 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 FAM30AQ9NZY2 134 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 RNF24Q9Y225 148 aa5.67□□□□□ -1.5
CD44-228ENST00000528455 LINC01619G3V211 115 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 CCL24O00175 119 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 LGALS9O00182 355 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 BMPR1BO00238 502 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 HYPMO75409 117 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 NPPCP23582 126 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 MYCNOSP40205 109 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 ELLP55199 621 aaPredicted RBP5.66□□□□□ -1.5
CD44-228ENST00000528455 DEFA5Q01523 94 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 KLF5Q13887 457 aaPredicted RBP5.66□□□□□ -1.5
CD44-228ENST00000528455 ACOT6Q3I5F7 207 aaPredicted RBP5.66□□□□□ -1.5
CD44-228ENST00000528455 MIC13Q5XKP0 118 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 TOMM20LQ6UXN7 152 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 DPPA3Q6W0C5 159 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 OR11H1Q8NG94 326 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 OR1L4Q8NGR5 311 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 LRRC20Q8TCA0 184 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 GATAD1Q8WUU5 269 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 RSG1Q9BU20 258 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 SLC25A32Q9H2D1 315 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 AURKAIP1Q9NWT8 199 aaPredicted RBP5.66□□□□□ -1.5
CD44-228ENST00000528455 MRPL27Q9P0M9 148 aaKnown RBP5.66□□□□□ -1.5
CD44-228ENST00000528455 PXMP4Q9Y6I8 212 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 MEGF8Q7Z7M0 2845 aa5.66□□□□□ -1.5
CD44-228ENST00000528455 VWFP04275 2813 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 PPP5D1E7EU14 171 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 M0QZ24 198 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 IFNA7P01567 189 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 TRBV12-3P01733 135 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 M6PRP20645 277 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 MALP21145 153 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 GATA2P23769 480 aaPredicted RBP5.65□□□□□ -1.5
CD44-228ENST00000528455 B2MP61769 119 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 RPEL1Q2QD12 228 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 FFAR4Q5NUL3 377 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 C11orf44Q8N8P7 122 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 KLHL30-AS1Q8NEE0 82 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 ZNF680Q8NEM1 530 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 RNF125Q96EQ8 232 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 ZNF414Q96IQ9 312 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 OR5B12Q96R08 314 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 PFDN5Q99471 154 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 RNF2Q99496 336 aa5.65□□□□□ -1.5
CD44-228ENST00000528455 PUS1Q9Y606 427 aaKnown RBP eCLIP5.65□□□□□ -1.5
CD44-228ENST00000528455 CMYA5Q8N3K9 4069 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms