RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, human

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-210	ENST00000508235	NHLRC4	P0CG21	123 aa	Predicted RBP	11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	ORM2	P19652	201 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	PLP1	P60201	277 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	RAP2B	P61225	183 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	EWSR1	Q01844	656 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	FGL1	Q08830	312 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	GBGT1	Q8N5D6	347 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	OR11H7	Q8NGC8	314 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	OR1B1	Q8NGR6	318 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	THAP6	Q8TBB0	222 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	RNF126	Q9BV68	326 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	MS4A6A	Q9H2W1	248 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	WDR83OS	Q9Y284	106 aa		11.21	□□□□□ -0.61
RNF4-210	ENST00000508235	MPDU1	O75352	247 aa		11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	HYPM	O75409	117 aa		11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	GIP	P09681	153 aa	Predicted RBP	11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	GATA2	P23769	480 aa	Predicted RBP	11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	TFPI2	P48307	235 aa		11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	SIGLEC15	Q6ZMC9	328 aa		11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	STXBP6	Q8NFX7	210 aa		11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	SRD5A3	Q9H8P0	318 aa		11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	MBD2	Q9UBB5	411 aa		11.2	□□□□□ -0.62
RNF4-210	ENST00000508235	UBE2L5P	A0A1B0GUS4	154 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	CAMLG	P49069	296 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	NHLH2	Q02577	135 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	TMEM182	Q6ZP80	229 aa	Predicted RBP	11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	WFDC3	Q8IUB2	231 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	OR8I2	Q8N0Y5	310 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	DEFB125	Q8N687	156 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	OR5C1	Q8NGR4	320 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	GPR82	Q96P67	336 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	MGST2	Q99735	147 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235	HIGD1A	Q9Y241	93 aa		11.19	□□□□□ -0.62
RNF4-210	ENST00000508235		K7EQG2	157 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	OR5G3	P0C626	314 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	LYL1	P12980	280 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	RPL12	P30050	165 aa	Known RBP	11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	ODF3L2	Q3SX64	289 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235		Q6ZRG5	221 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	CHAC2	Q8WUX2	184 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	NRN1	Q9NPD7	142 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	UBQLN2	Q9UHD9	624 aa		11.18	□□□□□ -0.62
RNF4-210	ENST00000508235	ELOA3C	A0A087WX78	387 aa	Predicted RBP	11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	ZNF98	A6NK75	572 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	FGF7	P21781	194 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	GALR1	P47211	349 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	SAMD13	Q5VXD3	122 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	SBSPON	Q8IVN8	264 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	STPG3	Q8N7X2	389 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	GGTLC1	Q9BX51	225 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	ARL6	Q9H0F7	186 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	WFDC10A	Q9H1F0	79 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	SEPSECS	Q9HD40	501 aa	Known RBP	11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	KCNIP2	Q9NS61	270 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	DOK5	Q9P104	306 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235	HSPB11	Q9Y547	144 aa		11.17	□□□□□ -0.62
RNF4-210	ENST00000508235		H3BRN7	92 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	RPL29	P47914	159 aa	Known RBP	11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	SNRPD3	P62318	126 aa	Known RBP	11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	CLINT1	Q14677	625 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	LINC00322	Q6ZN03	302 aa	Predicted RBP	11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	DCANP1	Q8TF63	244 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	ATP5S	Q99766	215 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	ASCL2	Q99929	193 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	SHANK2-AS3	Q9BTD1	123 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	ARV1	Q9H2C2	271 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	ZMAT4	Q9H898	229 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	SLC25A22	Q9H936	323 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	MAP6D1	Q9H9H5	199 aa		11.16	□□□□□ -0.62
RNF4-210	ENST00000508235	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	COX7A2P2	O60397	106 aa		11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	RPL7	P18124	248 aa	Known RBP	11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	MEOX2	P50222	304 aa		11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	B2M	P61769	119 aa		11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	OR1L4	Q8NGR5	311 aa		11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	PFDN5	Q99471	154 aa		11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	NPCDR1	Q9BY65	106 aa		11.15	□□□□□ -0.62
RNF4-210	ENST00000508235	RBMY1B	A6NDE4	496 aa	Known RBP	11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	RBMY1E	A6NEQ0	496 aa	Known RBP	11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	C17orf112	F2Z3M2	114 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	IFNA5	P01569	189 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	RBMY1D	P0C7P1	496 aa	Known RBP	11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	ID1	P41134	155 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	APOC4	P55056	127 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	DEFB131A	P59861	70 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	PRR20E	P86478	221 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	PRR20C	P86479	221 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	PRR20D	P86480	221 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	PRR20B	P86481	221 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	PRR20A	P86496	221 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	OPCML	Q14982	345 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	C10orf113	Q5VZT2	155 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	ZNF709	Q8N972	641 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	SCRT1	Q9BWW7	348 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	SLC25A32	Q9H2D1	315 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	DNAJC4	Q9NNZ3	241 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	SLC39A9	Q9NUM3	307 aa		11.14	□□□□□ -0.63
RNF4-210	ENST00000508235	ZNF688	P0C7X2	276 aa		11.13	□□□□□ -0.63
RNF4-210	ENST00000508235	HAGH	Q16775	308 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms