RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SURF2Q15527 256 aaPredicted RBP9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 ZNF79Q15937 498 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 ETFRF1Q6IPR1 90 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 FOXI2Q6ZQN5 318 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 LINC00299Q6ZSB3 139 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 DTD1Q8TEA8 209 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 NIPSNAP3BQ9BS92 247 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 YTHDF2Q9Y5A9 579 aaKnown RBP9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 RFNGQ9Y644 331 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 IGKV1OR2-108A0A075B7D4 117 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 SMIM9A6NGZ8 99 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 ZFP92A6NM28 416 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 DISC1C4P0D8 188 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 AKAIN1P0CW23 69 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 PSMB3P49720 205 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 FAM78BQ5VT40 261 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 TMEM88Q6PEY1 159 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 LGI3Q8N145 548 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 TMED3Q9Y3Q3 217 aa9.79□□□□□ -0.84
SQSTM1-208ENST00000485412 LOC102723971A0A1B0GUV8 181 aa9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 SSBP1Q04837 148 aaKnown RBP9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 TNP2Q05952 138 aa9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 SMCO1Q147U7 214 aa9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 OR8G2PQ6IF36 304 aa9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 COQ8AQ8NI60 647 aa9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 DYNC2LI1Q8TCX1 351 aa9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 U3KQ87 197 aa9.78□□□□□ -0.84
SQSTM1-208ENST00000485412 A0A0J9YX75 114 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 ANKRD20A5PA0PJZ0 165 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 IAPPP10997 89 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 AKR1C4P17516 323 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 CCR6P51684 374 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 PAX9P55771 341 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 AMTNQ6UX39 209 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 C15orf40Q8WUR7 153 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 IL22RA2Q969J5 263 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 CLUHP3Q96NS8 147 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 ATG101Q9BSB4 218 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 SLC25A32Q9H2D1 315 aa9.77□□□□□ -0.85
SQSTM1-208ENST00000485412 A0A0B4J2A0 478 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 PRB4P10163 310 aaPredicted RBP9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 GATA2P23769 480 aaPredicted RBP9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 ID1P41134 155 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 FAM3BP58499 235 aaPredicted RBP9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 MRPS10P82664 201 aaKnown RBP9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 PSG9Q00887 426 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 IL18Q14116 193 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 IGFL4Q6B9Z1 124 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 TMEM182Q6ZP80 229 aaPredicted RBP9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 NOXA1Q86UR1 476 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 Q8N1X5 172 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 SLC35E1Q96K37 410 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 PRRT1Q99946 306 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 SHPKQ9UHJ6 478 aa9.76□□□□□ -0.85
SQSTM1-208ENST00000485412 ISLRO14498 428 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 CTDSPLO15194 276 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 PITX3O75364 302 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 HBE1P02100 147 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 GPX4P36969 197 aaPredicted RBP9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 OXA1LQ15070 435 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 C1orf194Q5T5A4 169 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 OR8I2Q8N0Y5 310 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 OR1S1Q8NH92 325 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 PPP1R14BQ96C90 147 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 DIRAS2Q96HU8 199 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 C7orf50Q9BRJ6 194 aaKnown RBP9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 SCRT2Q9NQ03 307 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 MCUBQ9NWR8 336 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 CCDC59Q9P031 241 aaKnown RBP9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 GOLT1BQ9Y3E0 138 aa9.75□□□□□ -0.85
SQSTM1-208ENST00000485412 A8MTW9 85 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 ZNF705GA8MUZ8 300 aaPredicted RBP9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 PRSS46E5RG02 174 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 M0R2Z0 102 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 CRXO43186 299 aaPredicted RBP9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 NUP62P37198 522 aaPredicted RBP9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 DAD1P61803 113 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 EBLN2Q6P2I7 272 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 C6orf223Q8N319 242 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 THAP8Q8NA92 274 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 C15orf53Q8NAA6 179 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 TRGV9Q99603 122 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 SLIRPQ9GZT3 109 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 SLC25A22Q9H936 323 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 PAIP2BQ9ULR5 123 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 KCNIP3Q9Y2W7 256 aa9.74□□□□□ -0.85
SQSTM1-208ENST00000485412 TRAV8-2A0A0B4J237 113 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 A0A1B0GVG6 124 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 SNRPGP15A8MWD9 76 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 FCN2Q15485 313 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 SPINK13Q1W4C9 94 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 RRN3P1Q2M238 152 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 BAP18Q8IXM2 172 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 RNF182Q8N6D2 247 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 C16orf92Q96LL3 132 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 RSG1Q9BU20 258 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 MAGT1Q9H0U3 335 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 DOK5Q9P104 306 aa9.73□□□□□ -0.85
SQSTM1-208ENST00000485412 NBDYA0A0U1RRE5 68 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms