RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZNF600Q6ZNG1 722 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 Q6ZRG5 221 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 SLC39A9Q9NUM3 307 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 SLC45A2Q9UMX9 530 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 UMAD1C9J7I0 102 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PPP5D1E7EU14 171 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 COX7A2P2O60397 106 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 RD3LP0DJH9 198 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PRR20EP86478 221 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PRR20CP86479 221 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PRR20DP86480 221 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PRR20BP86481 221 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PRR20AP86496 221 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 KIAA0141Q14154 515 aaPredicted RBP9.27□□□□□ -0.93
PTPRF-208ENST00000437607 TMEM41BQ5BJD5 291 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 FAM74A1Q5RGS3 127 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 CASC10Q5T4H9 136 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PXDC1Q5TGL8 231 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 ZNF767PQ75MW2 155 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 ZNF680Q8NEM1 530 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 OR51G1Q8NGK1 321 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 OR1L4Q8NGR5 311 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 Q8WTZ3 238 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 CHRDL1Q9BU40 450 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PBDC1Q9BVG4 233 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 PEF1Q9UBV8 284 aaKnown RBP9.27□□□□□ -0.93
PTPRF-208ENST00000437607 ZNF256Q9Y2P7 627 aaPredicted RBP9.27□□□□□ -0.93
PTPRF-208ENST00000437607 ALMS1Q8TCU4 4167 aa9.27□□□□□ -0.93
PTPRF-208ENST00000437607 BMPR1BO00238 502 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 GGCTO75223 188 aaKnown RBP9.26□□□□□ -0.93
PTPRF-208ENST00000437607 YIF1AO95070 293 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 TRBV12-3P01733 135 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 IL4P05112 153 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 CTSGP08311 255 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 PSG1P11464 419 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 M6PRP20645 277 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 GATA2P23769 480 aaPredicted RBP9.26□□□□□ -0.93
PTPRF-208ENST00000437607 ADMP35318 185 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 SULT1A2P50226 295 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 RAB5CP51148 216 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 RAB2AP61019 212 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 RPEL1Q2QD12 228 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 S100A7AQ86SG5 101 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 SBSPONQ8IVN8 264 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 OR11H1Q8NG94 326 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 OR1B1Q8NGR6 318 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 RNF125Q96EQ8 232 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 PFDN5Q99471 154 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 DOK5Q9P104 306 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 PUS1Q9Y606 427 aaKnown RBP eCLIP9.26□□□□□ -0.93
PTPRF-208ENST00000437607 RFNGQ9Y644 331 aa9.26□□□□□ -0.93
PTPRF-208ENST00000437607 IGHV3-35A0A0C4DH35 117 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 I3L521 148 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 OR2C1O95371 312 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 OR5G3P0C626 314 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 ZP3P21754 424 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 S100A7P31151 101 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 FAM122CQ6P4D5 195 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 DPPA3Q6W0C5 159 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 MUC7Q8TAX7 377 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 FAM213BQ8TBF2 198 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 RNF141Q8WVD5 230 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 SLC25A22Q9H936 323 aa9.25□□□□□ -0.93
PTPRF-208ENST00000437607 ELOA3CA0A087WX78 387 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-208ENST00000437607 A0A1W2PPV4 95 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 ZNF705EA8MWA4 302 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-208ENST00000437607 NDUFA4O00483 81 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 HYPMO75409 117 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 ORM2P19652 201 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 CDC34P49427 236 aaPredicted RBP9.24□□□□□ -0.93
PTPRF-208ENST00000437607 RAB14P61106 215 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 IFITM2Q01629 132 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 C10orf113Q5VZT2 155 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 OR10G4Q8NGN3 311 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 OR10G9Q8NGN4 311 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 OR10G7Q8NGN6 311 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 LRRC20Q8TCA0 184 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 RCHY1Q96PM5 261 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 RNF2Q99496 336 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 MRPL32Q9BYC8 188 aaKnown RBP9.24□□□□□ -0.93
PTPRF-208ENST00000437607 HIGD1AQ9Y241 93 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 SMAD5-AS1Q9Y6J3 95 aa9.24□□□□□ -0.93
PTPRF-208ENST00000437607 IGHV4OR15-8A0A075B7B6 117 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 A0A087WW49 117 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 LINC01619G3V211 115 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 RGS13O14921 159 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 HSPB1P04792 205 aaKnown RBP9.23□□□□□ -0.93
PTPRF-208ENST00000437607 PLP1P60201 277 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 RHOBP62745 196 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 FAM106AQ4KMX7 169 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 GCSAMLQ5JQS6 135 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 GATAD1Q8WUU5 269 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 TMEM190Q8WZ59 177 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 NARS2Q96I59 477 aaKnown RBP9.23□□□□□ -0.93
PTPRF-208ENST00000437607 C20orf24Q9BUV8 137 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 ACTR3CQ9C0K3 210 aaPredicted RBP9.23□□□□□ -0.93
PTPRF-208ENST00000437607 VSIRQ9H7M9 311 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 ZFAND3Q9H8U3 227 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 PFDN2Q9UHV9 154 aa9.23□□□□□ -0.93
PTPRF-208ENST00000437607 RABAC1Q9UI14 185 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 691.4 ms