RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 PHF3Q92576 2039 aaKnown RBP2.81□□□□□ -1.96
SYNE1-212ENST00000423061 A0A087WX48 190 aa2.81□□□□□ -1.96
SYNE1-212ENST00000423061 PAXXQ9BUH6 204 aa2.81□□□□□ -1.96
SYNE1-212ENST00000423061 SIRPDQ9H106 197 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 IFI6P09912 130 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 CACNA1BQ00975 2339 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 TWIST1Q15672 202 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 hADV29S1A0JD25 119 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 FAM106CPP0CH98 169 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 FAM106AQ4KMX7 169 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 VKORC1Q9BQB6 163 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 RETNQ9HD89 108 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 IGHV1-24A0A0C4DH33 117 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 PATE4P0C8F1 98 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 PATE1Q8WXA2 126 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 COPS9Q8WXC6 57 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 LRRK1Q38SD2 2015 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 TRAV4A0A0B4J268 109 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 ZNF488Q96MN9 340 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 IGHV3-15A0A0B4J1V0 119 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 TGFBR3LH3BV60 316 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 PRRG2O14669 202 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 DUSP14O95147 198 aaKnown RBP2.8□□□□□ -1.96
SYNE1-212ENST00000423061 TAL2Q16559 108 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 SNRNP40Q96DI7 357 aaKnown RBP2.8□□□□□ -1.96
SYNE1-212ENST00000423061 CCL4L1Q8NHW4 92 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 Q96M66 194 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 ZNF747Q9BV97 191 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 SCGB3A1Q96QR1 104 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 RHODO00212 210 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 TMEM211Q6ICI0 200 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 LHFPL1Q86WI0 220 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 RAXQ9Y2V3 346 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 RLFQ13129 1914 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 A0A1W2PRX2 142 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 IGHMP01871 453 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 CKS2P33552 79 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 AMN1Q8IY45 258 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 FAM57AQ8TBR7 257 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 C10orf105Q8TEF2 133 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 PROCRQ9UNN8 238 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 COL4A5P29400 1685 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 C4orf51C9J302 202 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 M0R1B8 84 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 IGHV3-9P01782 118 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 U3KQE9 123 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 YLPM1P49750 1951 aaKnown RBP2.8□□□□□ -1.96
SYNE1-212ENST00000423061 RPS19BP1Q86WX3 136 aaKnown RBP2.8□□□□□ -1.96
SYNE1-212ENST00000423061 GATD1Q8NB37 220 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 HLA-DRB4P13762 266 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 Q8N1Y9 231 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 AJUBAQ96IF1 538 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 HLA-DRB4X5D2U9 266 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 NDUFS7O75251 213 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 DTX2Q86UW9 622 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 VWC2LB2RUY7 222 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 ORM1P02763 201 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 ZNF32P17041 273 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 ALPK3Q96L96 1907 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 CRLF1O75462 422 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 GTSF1Q8WW33 167 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 LINC01587Q99440 93 aa2.8□□□□□ -1.96
SYNE1-212ENST00000423061 NSUN5P1Q3KNT7 163 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 NUP37Q8NFH4 326 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A10PA6NDY2 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A18PA6NE21 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A16PA6NEW6 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A20PA6NIJ5 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A8PA6NJQ4 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A7PA6NKC0 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A22PA8MWA6 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A12PA8MX19 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A5PA8MXJ8 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A23PA8MXZ1 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A15PP0C7V4 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A13PP0C7W8 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A14PP0C7W9 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM90A24PP0C7X0 464 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 TMEM78Q5T7P6 136 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 LHX8Q68G74 356 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 ELSPBP1Q96BH3 223 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 LINC01549A6NIU2 74 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 COL9A1P20849 921 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 ACP1P24666 158 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 MBD3L2Q8NHZ7 208 aaPredicted RBP2.79□□□□□ -1.96
SYNE1-212ENST00000423061 CARD19Q96LW7 228 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 RNF186Q9NXI6 227 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 ZG16O60844 167 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 C10orf113Q5VZT2 155 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 IGKV1-9A0A0C4DH69 117 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 C17orf98A8MV24 154 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 LYZP61626 148 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 AICDAQ9GZX7 198 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 DIAPH2-AS1Q14236 149 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 DEFB104AQ8WTQ1 72 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 MYOD1P15172 320 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 UCNP55089 124 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 RPL11P62913 178 aaKnown RBP2.79□□□□□ -1.96
SYNE1-212ENST00000423061 ANAPC1Q9H1A4 1944 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 C2orf70A6NJV1 201 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms