RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 OR2C1O95371 312 aa10.43□□□□□ -0.74
HMGB1-202ENST00000339872 ADMP35318 185 aa10.43□□□□□ -0.74
HMGB1-202ENST00000339872 USF2Q15853 346 aaPredicted RBP10.43□□□□□ -0.74
HMGB1-202ENST00000339872 EEF1AKMT3Q96AZ1 226 aa10.43□□□□□ -0.74
HMGB1-202ENST00000339872 H3BRN7 92 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 CRYBB3P26998 211 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 OR5R1Q8NH85 324 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 CCDC140Q96MF4 163 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 SHANK2-AS3Q9BTD1 123 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 IGHV3-35A0A0C4DH35 117 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 AP4M1O00189 453 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 TRGV3P03979 118 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 CLEC19AQ6UXS0 136 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 ZNF600Q6ZNG1 722 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 GNB4Q9HAV0 340 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 ITPR3Q14573 2671 aa10.42□□□□□ -0.74
HMGB1-202ENST00000339872 GCN1Q92616 2671 aaKnown RBP10.42□□□□□ -0.74
HMGB1-202ENST00000339872 TRBV20OR9-2A0A075B6H5 130 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 PGPEP1LA6NFU8 196 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 FAM223BA6NKX1 122 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 CLEC3BP05452 202 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 NBEAP1P0C6P0 100 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 ATP5G2Q06055 141 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 RNF212Q495C1 297 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 Q6YL49 198 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 FAM223AQ8IWN6 122 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 C15orf54Q8N8G6 183 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 ELOVL1Q9BW60 279 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 TUBA4BQ9H853 241 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 GAR1Q9NY12 217 aaKnown RBP10.41□□□□□ -0.74
HMGB1-202ENST00000339872 VPREB3Q9UKI3 123 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 PDZD2O15018 2839 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 TRBV7-1A0A0A6YYK4 115 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 H3BTX0 84 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 PPIFP30405 207 aaKnown RBP10.41□□□□□ -0.74
HMGB1-202ENST00000339872 TPPP2P59282 170 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 RANP62826 216 aaKnown RBP10.41□□□□□ -0.74
HMGB1-202ENST00000339872 IL17RELQ6ZVW7 336 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 FOXC2Q99958 501 aa10.41□□□□□ -0.74
HMGB1-202ENST00000339872 AURKAIP1Q9NWT8 199 aaPredicted RBP10.41□□□□□ -0.74
HMGB1-202ENST00000339872 ZNF469Q96JG9 3925 aaPredicted RBP10.4□□□□□ -0.74
HMGB1-202ENST00000339872 COLCA2A8K830 154 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 RPL35P42766 123 aaKnown RBP10.4□□□□□ -0.74
HMGB1-202ENST00000339872 TMEM95Q3KNT9 176 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 ZNF343Q6P1L6 599 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 S100A7AQ86SG5 101 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 LINC01551Q86U37 167 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 ZNF329Q86UD4 541 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 TMEM14CQ9P0S9 112 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 IGHV3OR16-8A0A075B7F1 116 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 HOXA3O43365 443 aaPredicted RBP10.4□□□□□ -0.74
HMGB1-202ENST00000339872 TGOLN2O43493 480 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 BPIFA4PQ86YQ2 179 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 FAM24BQ8N5W8 94 aa10.4□□□□□ -0.74
HMGB1-202ENST00000339872 TEX15Q9BXT5 2789 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 ZNF98A6NK75 572 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 ATF4P18848 351 aaPredicted RBP10.39□□□□□ -0.75
HMGB1-202ENST00000339872 HNF1AP20823 631 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 C2CD4CQ8TF44 421 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 URGCP-MRPS24S4R325 110 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 HELTA6NFD8 242 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 H3BUA1 57 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 MT-ND4LP03901 98 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 PF4V1P10720 104 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 HIST1H2BAQ96A08 127 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 ZNF586Q9NXT0 402 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 RABAC1Q9UI14 185 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 PRELID1Q9Y255 219 aa10.39□□□□□ -0.75
HMGB1-202ENST00000339872 CCDC168Q8NDH2 2452 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 BMPR1BO00238 502 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 HIST1H1EP10412 219 aaKnown RBP10.38□□□□□ -0.75
HMGB1-202ENST00000339872 MYCNOSP40205 109 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 TOMM20LQ6UXN7 152 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 OR4F17Q8NGA8 305 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 ZNF414Q96IQ9 312 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 PGPA6NDG6 321 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 CXorf65A6NEN9 183 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 C9JCJ5 164 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 PPP5D1E7EU14 171 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 CLDN34H7C241 214 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 SLC25A5P05141 298 aaKnown RBP10.38□□□□□ -0.75
HMGB1-202ENST00000339872 CENPWQ5EE01 88 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 OCC1Q8TAD7 63 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 CTDSP1Q9GZU7 261 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 KLK15Q9H2R5 256 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 Q9H3A6 140 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 ZFAND3Q9H8U3 227 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 TMEM242Q9NWH2 141 aa10.38□□□□□ -0.75
HMGB1-202ENST00000339872 PEX7O00628 323 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 BRI3O95415 125 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 GNG4P50150 75 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 GNG5P63218 68 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 LCNL1Q6ZST4 164 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 YPEL4Q96NS1 127 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 RPH3ALQ9UNE2 315 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 UNC79Q9P2D8 2635 aa10.37□□□□□ -0.75
HMGB1-202ENST00000339872 IGLV1-40P01703 118 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 IGLC2P0DOY2 106 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 CFHR3Q02985 330 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 RELQ04864 619 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms