RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GFRA3O60609 400 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 SPINK2P20155 84 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 COLCA1Q6ZS62 124 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 NDUFB8O95169 186 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 LDLRAD2Q5SZI1 272 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 GFI1BQ5VTD9 330 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 FAM216BQ8N7L0 139 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 CELA3BP08861 270 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 CCL19Q99731 98 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 FBXL15Q9H469 300 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 ZNF479Q96JC4 524 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 CNTFRP26992 372 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 KLF2Q9Y5W3 355 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 SPAARA0A1B0GVQ0 90 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 M0R381 172 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 EMP1P54849 157 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 C18orf15Q96N68 181 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 COX11Q9Y6N1 276 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 LOC102724200A0A096LPH7 203 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 K7EMI3 77 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 CRXO43186 299 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 MORN3Q6PF18 240 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 PSG3Q16557 428 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 PLEKHB2Q96CS7 222 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 DUX5Q96PT3 197 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 C15orf62A8K5M9 175 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 J3KRW8 73 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 CELA3AP09093 270 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 FOXL2P58012 376 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 FOXF2Q12947 444 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 ESDP10768 282 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 HTN1P15515 57 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 LINC00477Q96M19 166 aa8.47□□□□□ -1.05
CCDC88A-202ENST00000336838 COL5A1P20908 1838 aaPredicted RBP8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 TDGF1P3P51864 188 aa8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 ZNF418Q8TF45 676 aaPredicted RBP8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 IGKV3-15P01624 115 aa8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 S100A7L2Q5SY68 101 aa8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 FAM74A4Q5TZK3 123 aa8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 TRBV20-1A0A075B6N2 111 aa8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 C9orf139Q6ZV77 190 aa8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 BCL6BQ8N143 479 aaPredicted RBP8.46□□□□□ -1.05
CCDC88A-202ENST00000336838 LTBRP36941 435 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 H0YJW9 148 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 ZFAND6Q6FIF0 208 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 USMG5Q96IX5 58 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 E9PLN8 166 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 YPEL3P61236 119 aaPredicted RBP8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 VKORC1Q9BQB6 163 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 KLK15Q9H2R5 256 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 SEPSECSQ9HD40 501 aaKnown RBP8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 SIGLEC15Q6ZMC9 328 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 MRAP2Q96G30 205 aa8.46□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHV1-18A0A0C4DH31 117 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 FAM223BA6NKX1 122 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 FAM223AQ8IWN6 122 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 WIPF2Q8TF74 440 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 MED13LQ71F56 2210 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 TMEM14CQ9P0S9 112 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 EFNA2O43921 213 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 ZNF562Q6V9R5 426 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 Q8NFD4 153 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 NHP2Q9NX24 153 aaKnown RBP8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 ZCCHC24Q8N2G6 241 aaKnown RBP8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 C9orf106Q8NAJ2 232 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 C11orf52Q96A22 123 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 VSIRQ9H7M9 311 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 A0A1W2PRD5 423 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 A0A1W2PRF3 423 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 A0A1W2PRM7 423 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHV1-8P0DP01 117 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 DSCR9P59020 149 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 NEGR1Q7Z3B1 354 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 Q8TCH9 128 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 DEPPQ9NTK1 212 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 ATP5J2P56134 94 aa8.45□□□□□ -1.06
CCDC88A-202ENST00000336838 COL4A4P53420 1690 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 SMIM27A0A1W2PRY6 76 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 CGB1A6NKQ9 187 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 COA6Q5JTJ3 125 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 NPFFR1Q9GZQ6 430 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 CPAMD8Q8IZJ3 1885 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 NDUFA3O95167 84 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 CSRP1P21291 193 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 B3GALT5-AS1P59052 145 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 ATXN8Q156A1 80 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 IGHV2-26A0A0B4J1V2 119 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 IGLV3-1P01715 115 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 ZNF329Q86UD4 541 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 ZNF664Q8N3J9 261 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 C8orf31Q8N9H6 132 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 C1orf147Q96MC9 270 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 IGKV3-7A0A075B6H7 116 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 SIVA1O15304 175 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 COX6B1P14854 86 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 GNG5P63218 68 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 CENPVQ7Z7K6 275 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 ANAPC13Q9BS18 74 aa8.44□□□□□ -1.06
CCDC88A-202ENST00000336838 PFN1P07737 140 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms