RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MMDQ15546 238 aa14.93□□□□□ -0.02
CPSF3-201ENST00000238112 Q6ZN92 141 aa14.93□□□□□ -0.02
CPSF3-201ENST00000238112 ATOH7Q8N100 152 aa14.93□□□□□ -0.02
CPSF3-201ENST00000238112 RBM14Q96PK6 669 aaKnown RBP14.93□□□□□ -0.02
CPSF3-201ENST00000238112 COL5A1-AS1Q5SY13 56 aa14.93□□□□□ -0.02
CPSF3-201ENST00000238112 SOX21Q9Y651 276 aaPredicted RBP14.93□□□□□ -0.02
CPSF3-201ENST00000238112 C19orf71A6NCJ1 209 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 B9A039 149 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 PSG1P11464 419 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 HNRNPA3P51991 378 aaKnown RBP14.92□□□□□ -0.02
CPSF3-201ENST00000238112 LCN12Q6JVE5 192 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 RPEQ96AT9 228 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 PGLYRP4Q96LB8 373 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 FBXL15Q9H469 300 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 ZNF318Q5VUA4 2279 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 DLEU1O43261 78 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 BTF3P20290 206 aaKnown RBP14.92□□□□□ -0.02
CPSF3-201ENST00000238112 COX7A1P24310 79 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 PLGLAQ15195 96 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 FAM162BQ5T6X4 162 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 SRSF12Q8WXF0 261 aaKnown RBP14.92□□□□□ -0.02
CPSF3-201ENST00000238112 OTORQ9NRC9 128 aa14.92□□□□□ -0.02
CPSF3-201ENST00000238112 IGLC1P0CG04 106 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 GTSF1Q8WW33 167 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 RASL11BQ9BPW5 248 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 CD3EP07766 207 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 Q56UQ5 140 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 PRR31Q5SQ13 230 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 EBLN2Q6P2I7 272 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 SLC25A39Q9BZJ4 359 aaPredicted RBP14.91□□□□□ -0.02
CPSF3-201ENST00000238112 GFRA4Q9GZZ7 299 aa14.91□□□□□ -0.02
CPSF3-201ENST00000238112 PCNX1Q96RV3 2341 aa14.9□□□□□ -0.02
CPSF3-201ENST00000238112 LYNX1G3V0Z9 82 aa14.9□□□□□ -0.02
CPSF3-201ENST00000238112 RBP4P02753 201 aa14.9□□□□□ -0.02
CPSF3-201ENST00000238112 LYNX1P0DP58 116 aa14.9□□□□□ -0.02
CPSF3-201ENST00000238112 RBPMS2Q6ZRY4 209 aaKnown RBP14.9□□□□□ -0.02
CPSF3-201ENST00000238112 OR8B3Q8NGG8 313 aa14.9□□□□□ -0.02
CPSF3-201ENST00000238112 OR8B2Q96RD0 313 aa14.9□□□□□ -0.02
CPSF3-201ENST00000238112 AKAP13Q12802 2813 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 PPIAL4CA0A0B4J2A2 164 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 PPIAL4GP0DN37 164 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 GAGE1Q13065 139 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 Q86TA4 180 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 TMEM14CQ9P0S9 112 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 GOLT1BQ9Y3E0 138 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 COL8A1P27658 744 aa14.89□□□□□ -0.03
CPSF3-201ENST00000238112 TRAV8-1A0A0A6YYK1 113 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.88□□□□□ -0.03
CPSF3-201ENST00000238112 FOXA3P55318 350 aaPredicted RBP14.88□□□□□ -0.03
CPSF3-201ENST00000238112 RBPJQ06330 500 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 MAJINQ3KP22 176 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 PRR30Q53SZ7 412 aaPredicted RBP14.88□□□□□ -0.03
CPSF3-201ENST00000238112 ADGRG4Q8IZF6 3080 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 ANKRD11Q6UB99 2663 aaPredicted RBP14.88□□□□□ -0.03
CPSF3-201ENST00000238112 I3L2K1 104 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 TOX4O94842 621 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 TFPI2P48307 235 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 GOLT1AQ6ZVE7 132 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 PRNTQ86SH4 94 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 EXOC3-AS1Q8N2X6 119 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 LAMTOR2Q9Y2Q5 125 aa14.88□□□□□ -0.03
CPSF3-201ENST00000238112 TRAV9-2A0A087WT02 112 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 FAM231BA6NCW3 169 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 C2orf70A6NJV1 201 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 CNIH1O95406 144 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 ZNF292O60281 2723 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 CHEK1O14757 476 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 TCF15Q12870 199 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 CIARTQ8N365 385 aaPredicted RBP14.87□□□□□ -0.03
CPSF3-201ENST00000238112 RNF5Q99942 180 aa14.87□□□□□ -0.03
CPSF3-201ENST00000238112 ACACAQ13085 2346 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 C20orf202A1L168 122 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 CD24P25063 80 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 URB1-AS1Q96HZ7 61 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 TMEM70Q9BUB7 260 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 BSNQ9UPA5 3926 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 NPIPB6E9PJ23 425 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 CHCHD1Q96BP2 118 aaKnown RBP14.86□□□□□ -0.03
CPSF3-201ENST00000238112 SRSF8Q9BRL6 282 aaKnown RBP14.86□□□□□ -0.03
CPSF3-201ENST00000238112 SCNM1Q9BWG6 230 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 CLEC5AQ9NY25 188 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 ONECUT1Q9UBC0 465 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 MALRD1Q5VYJ5 2156 aa14.86□□□□□ -0.03
CPSF3-201ENST00000238112 NPSP0C0P6 89 aa14.85□□□□□ -0.03
CPSF3-201ENST00000238112 M0QZ24 198 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 IGKV1-17P01599 117 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 TSPOP30536 169 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 BPIFA4PQ86YQ2 179 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 MUC15Q8N387 334 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 OR4F17Q8NGA8 305 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 ATMQ13315 3056 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 KALRNO60229 2985 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 IGLV2-11P01706 119 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 KIR3DL3Q8N743 410 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 RNF24Q9Y225 148 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 ZFP30Q9Y2G7 519 aa14.84□□□□□ -0.03
CPSF3-201ENST00000238112 RIF1Q5UIP0 2472 aaKnown RBP14.83□□□□□ -0.03
CPSF3-201ENST00000238112 SH2D7A6NKC9 451 aaPredicted RBP14.83□□□□□ -0.03
CPSF3-201ENST00000238112 GVINP1Q7Z2Y8 2422 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 LOC102724200A0A096LPH7 203 aaPredicted RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms