RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 YTHDF2Q9Y5A9 579 aaKnown RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 VPS13BQ7Z7G8 4022 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 LOC102723971A0A1B0GUV8 181 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 SMIM31A0A1B0GVY4 71 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 CEBPZOSA8MTT3 80 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 C16orf90A8MZG2 172 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 FAM25AB3EWG3 89 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 FAM25CB3EWG5 89 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 FAM25GB3EWG6 89 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 UCP1P25874 307 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 EIF2B2P49770 351 aaKnown RBP6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 NUTF2P61970 127 aaKnown RBP6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF90Q03938 601 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 C1orf134Q5TEV5 83 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 SELENOHQ8IZQ5 122 aaKnown RBP6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 ARRDC1Q8N5I2 433 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 SLC24A4Q8NFF2 622 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 C1QTNF4Q9BXJ3 329 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 Q9H521 79 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 SCPEP1Q9HB40 452 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 RFNGQ9Y644 331 aa6.11□□□□□ -1.43
SHKBP1-220ENST00000599716 TRAV30A0A087WSZ9 112 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 RPS10-NUDT3A0A1W2PQS6 291 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 APOA1P02647 267 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 RD3LP0DJH9 198 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 HTR2BP41595 481 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 NKX2-1P43699 371 aaPredicted RBP6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 RORCP51449 518 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 SPCS3P61009 180 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 YPEL3P61236 119 aaPredicted RBP6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 OR2F1Q13607 317 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 FCN2Q15485 313 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 C2orf83Q53S99 150 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 FAM78BQ5VT40 261 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 IGFL4Q6B9Z1 124 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 CROCCP3Q8IVE0 287 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 GLYATL2Q8WU03 294 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 C20orf173Q96LM9 149 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 ABHD1Q96SE0 405 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 NEU1Q99519 415 aa6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 C7orf50Q9BRJ6 194 aaKnown RBP6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 SAV1Q9H4B6 383 aaPredicted RBP6.1□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF705GA8MUZ8 300 aaPredicted RBP6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 SOCS3O14543 225 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 SCGB2A1O75556 95 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 TOMM40O96008 361 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 AP2S1P53680 142 aaPredicted RBP6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 LYZP61626 148 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 DAD1P61803 113 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 KCTD21Q4G0X4 260 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 TMEM268Q5VZI3 342 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 COQ8AQ8NI60 647 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 RNF125Q96EQ8 232 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF486Q96H40 463 aaPredicted RBP6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 C18orf15Q96N68 181 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 RTBDNQ9BSG5 229 aaPredicted RBP6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 NAA50Q9GZZ1 169 aaKnown RBP6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 TMEM222Q9H0R3 208 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 EXTL2Q9UBQ6 330 aa6.09□□□□□ -1.43
SHKBP1-220ENST00000599716 IGKV1D-37A0A075B6S9 117 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 TEX13DA0A0J9YY54 714 aaPredicted RBP6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 TMEM189A5PLL7 270 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 TMEM127O75204 238 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 ATG12O94817 140 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 CDS2O95674 445 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 RAB3DO95716 219 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 HBE1P02100 147 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 INAFM2P0DMQ5 153 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 DEFB130BP0DP73 79 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 DEFB130AP0DP74 79 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 SLC25A4P12235 298 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 AARDQ4LEZ3 155 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 SOHLH1Q5JUK2 328 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 FOXI2Q6ZQN5 318 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 CCDC71LQ8N9Z2 235 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 TERB2Q8NHR7 220 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 ZFAND1Q8TCF1 268 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 RNASEH2CQ8TDP1 164 aaKnown RBP6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 RBPMSQ93062 196 aaKnown RBP6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 C17orf77Q96MU5 243 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 FUNDC2Q9BWH2 189 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 NAA60Q9H7X0 242 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 MTFP1Q9UDX5 166 aa6.08□□□□□ -1.44
SHKBP1-220ENST00000599716 SMIM9A6NGZ8 99 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 ZFP92A6NM28 416 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 M0R2Z0 102 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 TNFAIP8O95379 198 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 NUDT3O95989 172 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 AZU1P20160 251 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 FUSP35637 526 aaKnown RBP eCLIP6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 PSG9Q00887 426 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 ZNF79Q15937 498 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 RRN3P1Q2M238 152 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 RNF212Q495C1 297 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 NMSQ5H8A3 153 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 STEAP1BQ6NZ63 245 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 OR52E5Q8NH55 327 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 PPP1R14BQ96C90 147 aa6.07□□□□□ -1.44
SHKBP1-220ENST00000599716 ATG101Q9BSB4 218 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms