RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FAM24BQ8N5W8 94 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 DEFB125Q8N687 156 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 ZNF645Q8N7E2 425 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 OR51S1Q8NGJ8 323 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 OR2K2Q8NGT1 345 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 LYPD6BQ8NI32 183 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 OSR1Q8TAX0 266 aaPredicted RBP5.05□□□□□ -1.6
VPS53-213ENST00000572334 CD300LFQ8TDQ1 290 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 ADTRPQ96IZ2 230 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 CCDC140Q96MF4 163 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 GPHA2Q96T91 129 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 NIPSNAP3BQ9BS92 247 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 LYRM2Q9NU23 88 aaPredicted RBP5.05□□□□□ -1.6
VPS53-213ENST00000572334 OR5AC2Q9NZP5 309 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 DOK5Q9P104 306 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 KLK11Q9UBX7 282 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 VAX2Q9UIW0 290 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 SELENOKQ9Y6D0 94 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 DNAH6Q9C0G6 4158 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 DNAH10Q8IVF4 4471 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 TMEM238LA0A1B0GVL6 79 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 TMEM213A2RRL7 107 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 K7EPK0 472 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 FCGR3BO75015 233 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 TUSC2O75896 110 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 OR2J3O76001 311 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 NDUFB8O95169 186 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 IFNA21P01568 189 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 ZNF735P0CB33 412 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 PGAM2P15259 253 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 ZNF25P17030 456 aaPredicted RBP5.04□□□□□ -1.6
VPS53-213ENST00000572334 DTYMKP23919 212 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 TAGLN2P37802 199 aaKnown RBP5.04□□□□□ -1.6
VPS53-213ENST00000572334 CAMLGP49069 296 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 RPL19P84098 196 aaKnown RBP5.04□□□□□ -1.6
VPS53-213ENST00000572334 ATP5G2Q06055 141 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 GAMTQ14353 236 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 C15orf32Q32M92 178 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 ACOT6Q3I5F7 207 aaPredicted RBP5.04□□□□□ -1.6
VPS53-213ENST00000572334 SCGB2B2Q4G0G5 96 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 COL5A1-AS1Q5SY13 56 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 DHRS11Q6UWP2 260 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 DPPA3Q6W0C5 159 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 SSX7Q7RTT5 188 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 GTSCR1Q86UQ5 136 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 TMEM183AQ8IXX5 376 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 MMD2Q8IY49 270 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 HIST3H2BBQ8N257 126 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 NECAP1Q8NC96 275 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 OR52B4Q8NGK2 314 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 GPX8Q8TED1 209 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 TMED6Q8WW62 240 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 CACNG8Q8WXS5 425 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 TVP23CQ96ET8 276 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 MISP3Q96FF7 219 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 ZNF2Q9BSG1 426 aaPredicted RBP5.04□□□□□ -1.6
VPS53-213ENST00000572334 PEMTQ9UBM1 199 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 OR2W1Q9Y3N9 320 aa5.04□□□□□ -1.6
VPS53-213ENST00000572334 C20orf202A1L168 122 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 TMEM235A6NFC5 223 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 NPIPB5A8MRT5 1133 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 LGALS9O00182 355 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 KBTBD11O94819 623 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 IGHV3-23P01764 117 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 CRYGCP07315 174 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 PTHLHP12272 177 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 AREGP15514 252 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 AKR1C2P52895 323 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 RPS20P60866 119 aaKnown RBP5.03□□□□□ -1.6
VPS53-213ENST00000572334 AKR1C1Q04828 323 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 ARFRP1Q13795 201 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 SURF2Q15527 256 aaPredicted RBP5.03□□□□□ -1.6
VPS53-213ENST00000572334 TMEM128Q5BJH2 165 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 Q6ZRG5 221 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 KCTD9Q7L273 389 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 GPHB5Q86YW7 130 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 OR10G4Q8NGN3 311 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 TMEM167AQ8TBQ9 72 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 SLC25A38Q96DW6 304 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 ZNF414Q96IQ9 312 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 C2orf50Q96LR7 162 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 SPIN2AQ99865 258 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 SPIN2BQ9BPZ2 258 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 SRD5A3Q9H8P0 318 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 ZNF257Q9Y2Q1 563 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 S4R3C0 116 aa5.03□□□□□ -1.6
VPS53-213ENST00000572334 AGRNO00468 2067 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 IGLV11-55A0A075B6I3 123 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 TRAV18A0A075B6X5 111 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 TRAV3A0A0B4J244 114 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 OR11H12B2RN74 326 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 PHOX2AO14813 284 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 MPPED1O15442 326 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 CD3DP04234 171 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 C8orf88P0DMB2 117 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 FABP4P15090 132 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 CBLN1P23435 193 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 OR10J1P30954 320 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 CDKN1BP46527 198 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 RPL27AP46776 148 aaKnown RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms