RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 GNPNAT1Q96EK6 184 aaPredicted RBP4.04□□□□□ -1.76
LDLR-209ENST00000558528 CITED1Q99966 193 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 RASL11BQ9BPW5 248 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 ZNF471Q9BX82 626 aaPredicted RBP4.04□□□□□ -1.76
LDLR-209ENST00000558528 QTRT1Q9BXR0 403 aaKnown RBP4.04□□□□□ -1.76
LDLR-209ENST00000558528 RBKSQ9H477 322 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 OR5AC2Q9NZP5 309 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 THYN1Q9P016 225 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 METTL1Q9UBP6 276 aaKnown RBP4.04□□□□□ -1.76
LDLR-209ENST00000558528 TCF19Q9Y242 345 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 SIGLEC9Q9Y336 463 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 DYSFO75923 2080 aa4.04□□□□□ -1.76
LDLR-209ENST00000558528 CHD3Q12873 2000 aaKnown RBP4.04□□□□□ -1.76
LDLR-209ENST00000558528 TEX50A0A1B0GTY4 177 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 FAM24AA6NFZ4 105 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 NCBP2LA6PVI3 153 aaKnown RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 SRRM4A7MD48 611 aaKnown RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 C17orf112F2Z3M2 114 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 TEX46H3BTG2 121 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 FGF16O43320 207 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 MPDU1O75352 247 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 CRLF1O75462 422 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 CNIH1O95406 144 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 IFNA4P05014 189 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 OR9G9P0C7N8 305 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 CXCL2P19875 107 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 SAA4P35542 130 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 GPX4P36969 197 aaPredicted RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 RPL27AP46776 148 aaKnown RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 RAB9AP51151 201 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 NKX2-5P52952 324 aaPredicted RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 LINC00205P59089 165 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 OR2B8PP59922 312 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 EWSR1Q01844 656 aaKnown RBP eCLIP4.03□□□□□ -1.76
LDLR-209ENST00000558528 RAB31Q13636 194 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 PSG5Q15238 335 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 PRSS8Q16651 343 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 C5orf64Q2M2E5 130 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 FAM106AQ4KMX7 169 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 LAMTOR1Q6IAA8 161 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 TEX261Q6UWH6 196 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 TMEM14EPQ6UXP3 125 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 C9orf139Q6ZV77 190 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 BAP18Q8IXM2 172 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 STPG2Q8N412 459 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 STXBP6Q8NFX7 210 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 STOML3Q8TAV4 291 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 RNASEH2CQ8TDP1 164 aaKnown RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 SCARB1Q8WTV0 552 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 CACNG8Q8WXS5 425 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 C22orf15Q8WYQ4 148 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 PARD6GQ9BYG4 376 aaPredicted RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 NDUFA4L2Q9NRX3 87 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 KCNIP2Q9NS61 270 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 FBXO7Q9Y3I1 522 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 CADP27708 2225 aa4.03□□□□□ -1.76
LDLR-209ENST00000558528 EPPK1P58107 5090 aaKnown RBP4.03□□□□□ -1.76
LDLR-209ENST00000558528 TENM1Q9UKZ4 2725 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 A0A096LNT2 108 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 IGLV9-49A0A0B4J1Y8 123 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 IGHV3-72A0A0B4J1Y9 119 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 TRAV40A0A0B4J280 105 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 A0A1W2PRD5 423 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 A0A1W2PRF3 423 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 A0A1W2PRM7 423 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 UMAD1C9J7I0 102 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 IGLV2-23P01705 113 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 MBP02144 154 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 SEC11BP0C7V7 166 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 FAM157CP0CG43 387 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 IAPPP10997 89 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 HIST1H1BP16401 226 aaKnown RBP4.02□□□□□ -1.77
LDLR-209ENST00000558528 HOXA5P20719 270 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 NPY1RP25929 384 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 S100A7P31151 101 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 VDAC2P45880 294 aaPredicted RBP4.02□□□□□ -1.77
LDLR-209ENST00000558528 PAX9P55771 341 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 RAB2AP61019 212 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 SERF2P84101 59 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 KLRD1Q13241 179 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 DIAPH2-AS1Q14236 149 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 TWIST1Q15672 202 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 TNXAQ16473 311 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 LRRC75BQ2VPJ9 315 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 C2orf83Q53S99 150 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 UTF1Q5T230 341 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 PXDC1Q5TGL8 231 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 RBMS3Q6XE24 437 aaKnown RBP4.02□□□□□ -1.77
LDLR-209ENST00000558528 S100A7AQ86SG5 101 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 KRTAP1-3Q8IUG1 177 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 PDZD9Q8IXQ8 264 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 VKORC1L1Q8N0U8 176 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 Q8N3U1 123 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 TMEM86BQ8N661 226 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 ZNF709Q8N972 641 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 OR5C1Q8NGR4 320 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 ATP5SQ99766 215 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 TMEM147Q9BVK8 224 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 HINT2Q9BX68 163 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 CSTL1Q9H114 145 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms