RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 C9orf62Q8N4C0 152 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 MGST2Q99735 147 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 WDR61Q9GZS3 305 aaKnown RBP7.38□□□□□ -1.23
CUX1-216ENST00000558469 IGHV3OR16-8A0A075B7F1 116 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 BCL2L11O43521 198 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 MPDU1O75352 247 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 YIF1AO95070 293 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 TOMM40O96008 361 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 FABP1P07148 127 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 RD3LP0DJH9 198 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 PSG1P11464 419 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 ZP3P21754 424 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 GATA2P23769 480 aaPredicted RBP7.37□□□□□ -1.23
CUX1-216ENST00000558469 FAM106AQ4KMX7 169 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 ZNF600Q6ZNG1 722 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 TMEM182Q6ZP80 229 aaPredicted RBP7.37□□□□□ -1.23
CUX1-216ENST00000558469 GPHB5Q86YW7 130 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 OR4F17Q8NGA8 305 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 Q8WTZ3 238 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 OR4F4Q96R69 305 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 NPCDR1Q9BY65 106 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 PARD6GQ9BYG4 376 aaPredicted RBP7.37□□□□□ -1.23
CUX1-216ENST00000558469 CYTL1Q9NRR1 136 aa7.37□□□□□ -1.23
CUX1-216ENST00000558469 PUS1Q9Y606 427 aaKnown RBP eCLIP7.37□□□□□ -1.23
CUX1-216ENST00000558469 ZNF320A2RRD8 509 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 C17orf112F2Z3M2 114 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 NDUFA4O00483 81 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 JTBO76095 146 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 PF4P02776 101 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 MYCNOSP40205 109 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 SYNJ2BPP57105 145 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 SELENOTP62341 195 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 FHL3Q13643 280 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 KLF5Q13887 457 aaPredicted RBP7.36□□□□□ -1.23
CUX1-216ENST00000558469 OPCMLQ14982 345 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 TOMM20LQ6UXN7 152 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 ZNF709Q8N972 641 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 HSD17B11Q8NBQ5 300 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 BPIFCQ8NFQ6 507 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 OR51G1Q8NGK1 321 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 DLX4Q92988 240 aaPredicted RBP7.36□□□□□ -1.23
CUX1-216ENST00000558469 RCC1LQ96I51 464 aaKnown RBP7.36□□□□□ -1.23
CUX1-216ENST00000558469 ZNF414Q96IQ9 312 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 RSG1Q9BU20 258 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 C20orf24Q9BUV8 137 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 GGTLC1Q9BX51 225 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 ZNF471Q9BX82 626 aaPredicted RBP7.36□□□□□ -1.23
CUX1-216ENST00000558469 SLC45A2Q9UMX9 530 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 RFNGQ9Y644 331 aa7.36□□□□□ -1.23
CUX1-216ENST00000558469 M0QZ24 198 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 ZNF207O43670 478 aaKnown RBP7.35□□□□□ -1.23
CUX1-216ENST00000558469 IL4P05112 153 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 LINC00869P0C866 280 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 C4BPBP20851 252 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 LYZP61626 148 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 MIC13Q5XKP0 118 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 UNQ9165/PRO28630Q6UXU0 137 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 C1QL4Q86Z23 238 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 STPG3Q8N7X2 389 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 PPP1R14BQ96C90 147 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 PBDC1Q9BVG4 233 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 PXMP4Q9Y6I8 212 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 VWFP04275 2813 aa7.35□□□□□ -1.23
CUX1-216ENST00000558469 WI2-2373I1.2A0A1W2PRP0 233 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 LGALS9O00182 355 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 TSPAN15O95858 294 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 CFDP00746 253 aaPredicted RBP7.34□□□□□ -1.23
CUX1-216ENST00000558469 ORM2P19652 201 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 ATP6V0CP27449 155 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 RPL29P47914 159 aaKnown RBP7.34□□□□□ -1.23
CUX1-216ENST00000558469 B2MP61769 119 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 KRTAP21-3Q3LHN1 58 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 TM4SF20Q53R12 229 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 Q6ZRG5 221 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 OR1B1Q8NGR6 318 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 TMEM190Q8WZ59 177 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 GNPNAT1Q96EK6 184 aaPredicted RBP7.34□□□□□ -1.23
CUX1-216ENST00000558469 RNF125Q96EQ8 232 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 GINS3Q9BRX5 216 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 SH3BGRL3Q9H299 93 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 SLC39A9Q9NUM3 307 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 DOK5Q9P104 306 aa7.34□□□□□ -1.23
CUX1-216ENST00000558469 OVOL1O14753 267 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 OR5G3P0C626 314 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 TPT1P13693 172 aaKnown RBP7.33□□□□□ -1.24
CUX1-216ENST00000558469 NPPCP23582 126 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 EIF5AP63241 154 aaKnown RBP7.33□□□□□ -1.24
CUX1-216ENST00000558469 USF2Q15853 346 aaPredicted RBP7.33□□□□□ -1.24
CUX1-216ENST00000558469 FFAR4Q5NUL3 377 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 REC114Q7Z4M0 266 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 SLC51BQ86UW2 128 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 LINC00482Q8N8I6 264 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 OR9G4Q8NGQ1 327 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 PSMG3Q9BT73 122 aaPredicted RBP7.33□□□□□ -1.24
CUX1-216ENST00000558469 ARV1Q9H2C2 271 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 SLC25A32Q9H2D1 315 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 DAZ1Q9NQZ3 744 aaKnown RBP7.33□□□□□ -1.24
CUX1-216ENST00000558469 KCNIP2Q9NS61 270 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 RABAC1Q9UI14 185 aa7.33□□□□□ -1.24
CUX1-216ENST00000558469 UFC1Q9Y3C8 167 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms