RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SOCS3O14543 225 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 RAB3DO95716 219 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 SLC25A4P12235 298 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 NPY1RP25929 384 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 EIF2B2P49770 351 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 AP2S1P53680 142 aaPredicted RBP10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 SNRPD3P62318 126 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 FAM222AQ5U5X8 452 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 TMEM268Q5VZI3 342 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 TMEM229BQ8NBD8 167 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 ZFAND1Q8TCF1 268 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 RBPMSQ93062 196 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 NEU1Q99519 415 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 C1QTNF4Q9BXJ3 329 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 TEX13DA0A0J9YY54 714 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 SCGB2A1O75556 95 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 SPART-AS1P0CW21 52 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 RD3LP0DJH9 198 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 TBPP20226 339 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 NKX2-1P43699 371 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 ZNF90Q03938 601 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 CTF1Q16619 201 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 NMSQ5H8A3 153 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 STEAP1BQ6NZ63 245 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 FAM219AQ8IW50 185 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 C1orf158Q8N1D5 194 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 RNF125Q96EQ8 232 aa10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 SAV1Q9H4B6 383 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 SEPSECSQ9HD40 501 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-213ENST00000541953 IFNA10P01566 189 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 PRM2P04554 102 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 HTN3P15516 51 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 RORCP51449 518 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 TAS2R19P59542 299 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 C20orf173Q96LM9 149 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 C17orf77Q96MU5 243 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 LINC00052Q96N35 136 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 PBDC1Q9BVG4 233 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 VCX3AQ9NNX9 186 aa10.96□□□□□ -0.65
CLSTN3-213ENST00000541953 CRYM-AS1A6NIL9 109 aa10.95□□□□□ -0.66
CLSTN3-213ENST00000541953 NUTF2P61970 127 aaKnown RBP10.95□□□□□ -0.66
CLSTN3-213ENST00000541953 GPR107Q5VW38 600 aa10.95□□□□□ -0.66
CLSTN3-213ENST00000541953 UBE2DNLQ8IWF7 75 aa10.95□□□□□ -0.66
CLSTN3-213ENST00000541953 OR4C16Q8NGL9 310 aa10.95□□□□□ -0.66
CLSTN3-213ENST00000541953 TMEM56-RWDD3S4R434 201 aa10.95□□□□□ -0.66
CLSTN3-213ENST00000541953 TNFAIP8O95379 198 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 ZNF79Q15937 498 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 TMEM88Q6PEY1 159 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 FOXI2Q6ZQN5 318 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 OR4B1Q8NGF8 309 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 NIPSNAP3BQ9BS92 247 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 RBKSQ9H477 322 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 GPR132Q9UNW8 380 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 C14orf166Q9Y224 244 aaKnown RBP10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 YTHDF2Q9Y5A9 579 aaKnown RBP10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 RFNGQ9Y644 331 aa10.94□□□□□ -0.66
CLSTN3-213ENST00000541953 GABARAPH6UMI1 98 aa10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 GSTZ1O43708 216 aaPredicted RBP10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 B3GALNT1O75752 331 aa10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 GABARAPO95166 117 aa10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 SMIM18P0DKX4 95 aa10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 ZNF182P17025 639 aaPredicted RBP10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 GAMTQ14353 236 aa10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 FAM78BQ5VT40 261 aa10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 MZT2AQ6P582 158 aa10.93□□□□□ -0.66
CLSTN3-213ENST00000541953 IGKV1OR2-108A0A075B7D4 117 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 LOC102723971A0A1B0GUV8 181 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 SMIM9A6NGZ8 99 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 CTDSP2O14595 271 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 SULT1A3P0DMM9 295 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 SULT1A4P0DMN0 295 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 PSMB3P49720 205 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 LYZP61626 148 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 OR2F1Q13607 317 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 ETFRF1Q6IPR1 90 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 LYZL2Q7Z4W2 148 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 DTD1Q8TEA8 209 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 HSPB7Q9UBY9 170 aa10.92□□□□□ -0.66
CLSTN3-213ENST00000541953 A0A0J9YX75 114 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 TMEM189A5PLL7 270 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 IFNA21P01568 189 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 PAX9P55771 341 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 SUPT4H1P63272 117 aaKnown RBP10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 TNP2Q05952 138 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 KLF9Q13886 244 aaPredicted RBP10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 OR8G2PQ6IF36 304 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 AMTNQ6UX39 209 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 LGI3Q8N145 548 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 OR51S1Q8NGJ8 323 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 COQ8AQ8NI60 647 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 SMIM4Q8WVI0 70 aa10.91□□□□□ -0.66
CLSTN3-213ENST00000541953 ZFP92A6NM28 416 aa10.9□□□□□ -0.66
CLSTN3-213ENST00000541953 PRB4P10163 310 aaPredicted RBP10.9□□□□□ -0.66
CLSTN3-213ENST00000541953 PSG9Q00887 426 aa10.9□□□□□ -0.66
CLSTN3-213ENST00000541953 SURF2Q15527 256 aaPredicted RBP10.9□□□□□ -0.66
CLSTN3-213ENST00000541953 AP3S1Q92572 193 aa10.9□□□□□ -0.66
CLSTN3-213ENST00000541953 FAM210BQ96KR6 192 aa10.9□□□□□ -0.66
CLSTN3-213ENST00000541953 CLUHP3Q96NS8 147 aa10.9□□□□□ -0.66
CLSTN3-213ENST00000541953 OXA1LQ15070 435 aa10.89□□□□□ -0.67
CLSTN3-213ENST00000541953 RNF212Q495C1 297 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms