RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 KCNE3Q9Y6H6 103 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 ZNF236Q9UL36 1845 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 FANCMQ8IYD8 2048 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 LY6G6EA0A0G2JKS1 128 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 LOC107984640A0A0U1RRK4 108 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 CTXND1A0A1B0GTU2 59 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 SNURFLB1AK76 121 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 TMEM178BH3BS89 294 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 H3BTX0 84 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 TNFSF12O43508 249 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 PDCD6O75340 191 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 NDUFB4O95168 129 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 TRACP01848 142 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 RBP4P02753 201 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 COL8A2P25067 703 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 ADORA2A-AS1P86434 159 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 SRSF9Q13242 221 aaKnown RBP eCLIP4.38□□□□□ -1.71
CD44-236ENST00000533222 C1orf61Q13536 156 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 TMEM187Q14656 261 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 LGALS9BQ3B8N2 356 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 FAM78AQ5JUQ0 283 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 LGALS9CQ6DKI2 356 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.38□□□□□ -1.71
CD44-236ENST00000533222 CLDN23Q96B33 292 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 ZNF501Q96CX3 271 aaPredicted RBP4.38□□□□□ -1.71
CD44-236ENST00000533222 TIMD4Q96H15 378 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 LINC00477Q96M19 166 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 FAM103A1Q9BTL3 118 aaKnown RBP4.38□□□□□ -1.71
CD44-236ENST00000533222 SLC25A2Q9BXI2 301 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 PLA2G12AQ9BZM1 189 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 MAP6D1Q9H9H5 199 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 OSTCQ9NRP0 149 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 TNFRSF19Q9NS68 423 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 C20orf141Q9NUB4 165 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 KLK13Q9UKR3 277 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 UBR3Q6ZT12 1888 aa4.38□□□□□ -1.71
CD44-236ENST00000533222 NUP210Q8TEM1 1887 aaPredicted RBP4.37□□□□□ -1.71
CD44-236ENST00000533222 PCSK5Q92824 1860 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 IGLV3-22A0A075B6J6 115 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 TRAV12-2A0A075B6T6 113 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 FAM24AA6NFZ4 105 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 DDTLA6NHG4 134 aaPredicted RBP4.37□□□□□ -1.71
CD44-236ENST00000533222 C2CD4DB7Z1M9 353 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 LMO7DNF2Z398 122 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 CST7O76096 145 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 NDUFB2O95178 105 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 SCGB1C2P0DMR2 95 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 FOXA3P55318 350 aaPredicted RBP4.37□□□□□ -1.71
CD44-236ENST00000533222 RPL30P62888 115 aaKnown RBP4.37□□□□□ -1.71
CD44-236ENST00000533222 Q6ZRU5 148 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 AAED1Q7RTV5 226 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 SH2D6Q7Z4S9 175 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 CEND1Q8N111 149 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 OR5AS1Q8N127 324 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 RYBPQ8N488 228 aaPredicted RBP4.37□□□□□ -1.71
CD44-236ENST00000533222 TMEM252Q8N6L7 170 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 LINC01555Q8NAE3 123 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 ZPLD1Q8TCW7 415 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 TMEM158Q8WZ71 300 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 C18orf12Q96KH6 178 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 FRG2BQ96QU4 278 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 PELI2Q9HAT8 420 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 PILRAQ9UKJ1 303 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 PYGO1Q9Y3Y4 419 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 COL4A4P53420 1690 aaPredicted RBP4.37□□□□□ -1.71
CD44-236ENST00000533222 OBSL1O75147 1896 aa4.37□□□□□ -1.71
CD44-236ENST00000533222 GREB1LQ9C091 1923 aaPredicted RBP4.36□□□□□ -1.71
CD44-236ENST00000533222 ZFP92A6NM28 416 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 A8MWV9 139 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 USP17L23D6RBM5 183 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 ATOX1O00244 68 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 LEPROTL1O95214 131 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 P04436 131 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 PYYP10082 97 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 LIFP15018 202 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 CDAP32320 146 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 PFN2P35080 140 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 PMAIP1Q13794 54 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 FAM201AQ5SY85 155 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 HES3Q5TGS1 186 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 TCF23Q7RTU1 214 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 TRAPPC6BQ86SZ2 158 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 NFE4Q86UQ8 179 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 LYPD6Q86Y78 171 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 SSC4DQ8WTU2 575 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 LRRC29Q8WV35 223 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 C11orf52Q96A22 123 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 MGST2Q99735 147 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 PDCD1LG2Q9BQ51 273 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 PLA2G2FQ9BZM2 168 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 AGPAT4-IT1Q9H0P7 198 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 RNASE7Q9H1E1 156 aaKnown RBP4.36□□□□□ -1.71
CD44-236ENST00000533222 ZNF665Q9H7R5 613 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 ZNF286AQ9HBT8 521 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 IL36RNQ9UBH0 155 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 CKLFQ9UBR5 152 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 CACNG5Q9UF02 275 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 TMEM14AQ9Y6G1 99 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 ANAPC1Q9H1A4 1944 aa4.36□□□□□ -1.71
CD44-236ENST00000533222 NUP214P35658 2090 aaPredicted RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms