RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 OR10W1Q8NGF6 305 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 C1QTNF4Q9BXJ3 329 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 HIGD1CA8MV81 97 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 ERVK11-1P61568 191 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 PRR30Q53SZ7 412 aaPredicted RBP13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 HEATR1Q9H583 2144 aaKnown RBP13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 THSD7BQ9C0I4 1608 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 NOTCH3Q9UM47 2321 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 A6NNC1 897 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 RPL23P62829 140 aaKnown RBP13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 KLHL30-AS1Q8NEE0 82 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 FOXC2Q99958 501 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 A0A0A6YYD4 124 aa13.36□□□□□ -0.27
PCDHA3-201ENST00000522353 C1QTNF9P0C862 333 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 VCX2Q9H322 139 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 A0A087WV48 116 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 PYYP10082 97 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 IMMP2LQ96T52 175 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 TTC28Q96AY4 2481 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 GNG5P63218 68 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 OSTCQ9NRP0 149 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 IGKV1-27A0A075B6S5 117 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 LY6G6FQ5SQ64 297 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 DOCK7Q96N67 2140 aa13.35□□□□□ -0.27
PCDHA3-201ENST00000522353 NAPSAO96009 420 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 PNRC2Q9NPJ4 139 aaKnown RBP13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 IGKV1D-8A0A087WSZ0 117 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 GHRHP01286 108 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 PPBPP02775 128 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 CD55P08174 381 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 EFNB3Q15768 340 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 C9orf139Q6ZV77 190 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 PRADC1Q9BSG0 188 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 LCNL1Q6ZST4 164 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 PARD6GQ9BYG4 376 aaPredicted RBP13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 BEX4Q9NWD9 120 aaPredicted RBP13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 SAA4P35542 130 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 CHCHD5Q9BSY4 110 aa13.34□□□□□ -0.27
PCDHA3-201ENST00000522353 H0YJW9 148 aa13.33□□□□□ -0.27
PCDHA3-201ENST00000522353 LY6HO94772 140 aa13.33□□□□□ -0.27
PCDHA3-201ENST00000522353 OR9G4Q8NGQ1 327 aa13.33□□□□□ -0.27
PCDHA3-201ENST00000522353 DOCK8Q8NF50 2099 aa13.33□□□□□ -0.27
PCDHA3-201ENST00000522353 FAM223BA6NKX1 122 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 F8VVB4 439 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 F8VWA3 439 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 FAM223AQ8IWN6 122 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 PEF1Q9UBV8 284 aaKnown RBP13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 TRBV6-6A0A0A6YYG2 114 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 F2Z2F3 143 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 A0A087WX48 190 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 JKAMPQ9P055 326 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 PSG1P11464 419 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 NUDT10Q8NFP7 164 aa13.33□□□□□ -0.28
PCDHA3-201ENST00000522353 NYNRINQ9P2P1 1898 aaKnown RBP13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 FOXL2NBQ6ZUU3 175 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 DTX1Q86Y01 620 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 GFI1Q99684 422 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 IGKV1D-17A0A075B6S4 117 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 H0YIZ8 118 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 HGFACQ04756 655 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 TRGV9Q99603 122 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 KLHDC3Q9BQ90 382 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 SIGLEC9Q9Y336 463 aa13.32□□□□□ -0.28
PCDHA3-201ENST00000522353 ZNF688P0C7X2 276 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 MRPL16Q9NX20 251 aaKnown RBP13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 CYSLTR1Q9Y271 337 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 BDP1A6H8Y1 2624 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 ZNF415Q09FC8 603 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 ZNF329Q86UD4 541 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 PRDM13Q9H4Q3 707 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 MUC6Q6W4X9 2439 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 RNASE7Q9H1E1 156 aaKnown RBP13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 RBMY1BA6NDE4 496 aaKnown RBP13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 RBMY1EA6NEQ0 496 aaKnown RBP13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 RBMY1DP0C7P1 496 aaKnown RBP13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 RBMY1A1P0DJD3 496 aaKnown RBP13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 RBMY1CP0DJD4 496 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 TREML4Q6UXN2 200 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 LHFPL1Q86WI0 220 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 MBD3L1Q8WWY6 194 aa13.31□□□□□ -0.28
PCDHA3-201ENST00000522353 LINC01549A6NIU2 74 aa13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 UBE2E1P51965 193 aa13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 CEACAM8P31997 349 aaPredicted RBP13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 LYPD2Q6UXB3 125 aa13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 PRSS33Q8NF86 280 aa13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 NXT2Q9NPJ8 142 aaKnown RBP13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 PMS2P5A8MQ11 134 aa13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 Q96MF0 132 aa13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 PCNX1Q96RV3 2341 aa13.3□□□□□ -0.28
PCDHA3-201ENST00000522353 SRSF1Q07955 248 aaKnown RBP eCLIP13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 ORMDL2Q53FV1 153 aa13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 Q6P435 159 aa13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 COQ2Q96H96 371 aa13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 SRSF8Q9BRL6 282 aaKnown RBP13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 SEPSECSQ9HD40 501 aaKnown RBP13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 LY6G6EA0A0G2JKS1 128 aa13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 RPL15P61313 204 aaKnown RBP13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 CTAG1AP78358 180 aa13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 RCHY1Q96PM5 261 aa13.29□□□□□ -0.28
PCDHA3-201ENST00000522353 U3KQA8 63 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms