RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SMIM3Q9BZL3 60 aa22.52■■□□□ 1.2
LIMCH1-211ENST00000509638 ELLP55199 621 aaPredicted RBP22.51■■□□□ 1.19
LIMCH1-211ENST00000509638 C9orf66Q5T8R8 295 aa22.51■■□□□ 1.19
LIMCH1-211ENST00000509638 OR51G1Q8NGK1 321 aa22.51■■□□□ 1.19
LIMCH1-211ENST00000509638 WDR83OSQ9Y284 106 aa22.51■■□□□ 1.19
LIMCH1-211ENST00000509638 RNF222A6NCQ9 220 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 OXLD1Q5BKU9 147 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 ATP5SQ99766 215 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 ARPC5O15511 151 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 FOLR2P14207 255 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 ADAMTSL5Q6ZMM2 481 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 CYP2G1PQ6ZSU1 146 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 TCTE3Q8IZS6 198 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 MGST2Q99735 147 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 FBXL17Q9UF56 701 aa22.5■■□□□ 1.19
LIMCH1-211ENST00000509638 K7EMT4 169 aa22.49■■□□□ 1.19
LIMCH1-211ENST00000509638 GATA2P23769 480 aaPredicted RBP22.49■■□□□ 1.19
LIMCH1-211ENST00000509638 RNF125Q96EQ8 232 aa22.49■■□□□ 1.19
LIMCH1-211ENST00000509638 AGPAT2O15120 278 aa22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 FGF7P21781 194 aa22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 CBLN1P23435 193 aa22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 USF2Q15853 346 aaPredicted RBP22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 BTNL8Q6UX41 500 aa22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 TMEM182Q6ZP80 229 aaPredicted RBP22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 GPR61Q9BZJ8 451 aa22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 SIGLEC8Q9NYZ4 499 aa22.48■■□□□ 1.19
LIMCH1-211ENST00000509638 G3V4G9 280 aa22.47■■□□□ 1.19
LIMCH1-211ENST00000509638 AP2S1P53680 142 aaPredicted RBP22.47■■□□□ 1.19
LIMCH1-211ENST00000509638 LYZP61626 148 aa22.47■■□□□ 1.19
LIMCH1-211ENST00000509638 BPIFCQ8NFQ6 507 aa22.47■■□□□ 1.19
LIMCH1-211ENST00000509638 OR11H4Q8NGC9 324 aa22.47■■□□□ 1.19
LIMCH1-211ENST00000509638 PBDC1Q9BVG4 233 aa22.47■■□□□ 1.19
LIMCH1-211ENST00000509638 DFFBO76075 338 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 INSL3P51460 131 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 DYNLRB2Q8TF09 96 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 MARC2Q969Z3 335 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 IGHV3-49A0A0A0MS15 119 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 WI2-2373I1.2A0A1W2PRP0 233 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 CAMLGP49069 296 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 SELENOTP62341 195 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 RAB31Q13636 194 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 METTL26Q96S19 204 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 GGTLC1Q9BX51 225 aa22.46■■□□□ 1.19
LIMCH1-211ENST00000509638 SAMD5Q5TGI4 173 aa22.45■■□□□ 1.18
LIMCH1-211ENST00000509638 WFDC1Q9HC57 220 aa22.45■■□□□ 1.18
LIMCH1-211ENST00000509638 MRPL27Q9P0M9 148 aaKnown RBP22.45■■□□□ 1.18
LIMCH1-211ENST00000509638 IGHV7-4-1A0A0J9YVY3 117 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 WIPF1O43516 503 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 MPDU1O75352 247 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 LINC00869P0C866 280 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 C8orf88P0DMB2 117 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 CD300CQ08708 224 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 SLC45A2Q9UMX9 530 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 SELENOKQ9Y6D0 94 aa22.44■■□□□ 1.18
LIMCH1-211ENST00000509638 IGHV3OR16-13A0A075B7E8 117 aa22.43■■□□□ 1.18
LIMCH1-211ENST00000509638 IGHV3-74A0A0B4J1X5 117 aa22.43■■□□□ 1.18
LIMCH1-211ENST00000509638 CFDP00746 253 aaPredicted RBP22.43■■□□□ 1.18
LIMCH1-211ENST00000509638 NPCDR1Q9BY65 106 aa22.43■■□□□ 1.18
LIMCH1-211ENST00000509638 WDR61Q9GZS3 305 aaKnown RBP22.43■■□□□ 1.18
LIMCH1-211ENST00000509638 MFFQ9GZY8 342 aa22.43■■□□□ 1.18
LIMCH1-211ENST00000509638 MLXQ9UH92 298 aa22.43■■□□□ 1.18
LIMCH1-211ENST00000509638 IGLV1-51P01701 117 aa22.42■■□□□ 1.18
LIMCH1-211ENST00000509638 NPPCP23582 126 aa22.42■■□□□ 1.18
LIMCH1-211ENST00000509638 SMPXQ9UHP9 88 aa22.42■■□□□ 1.18
LIMCH1-211ENST00000509638 RABAC1Q9UI14 185 aa22.42■■□□□ 1.18
LIMCH1-211ENST00000509638 APOHP02749 345 aaPredicted RBP22.42■■□□□ 1.18
LIMCH1-211ENST00000509638 CRYBB3P26998 211 aa22.42■■□□□ 1.18
LIMCH1-211ENST00000509638 HMSDA8MTL9 139 aa22.41■■□□□ 1.18
LIMCH1-211ENST00000509638 IFNA5P01569 189 aa22.41■■□□□ 1.18
LIMCH1-211ENST00000509638 HNRNPCP07910 306 aaKnown RBP eCLIP22.41■■□□□ 1.18
LIMCH1-211ENST00000509638 OPCMLQ14982 345 aa22.41■■□□□ 1.18
LIMCH1-211ENST00000509638 STPG3Q8N7X2 389 aa22.41■■□□□ 1.18
LIMCH1-211ENST00000509638 RHPN1-AS1Q9BWJ2 59 aa22.41■■□□□ 1.18
LIMCH1-211ENST00000509638 DOK5Q9P104 306 aa22.41■■□□□ 1.18
LIMCH1-211ENST00000509638 IGHV3-66A0A0C4DH42 116 aa22.4■■□□□ 1.18
LIMCH1-211ENST00000509638 ORM2P19652 201 aa22.4■■□□□ 1.18
LIMCH1-211ENST00000509638 OR1B1Q8NGR6 318 aa22.4■■□□□ 1.18
LIMCH1-211ENST00000509638 ST8SIA2Q92186 375 aa22.4■■□□□ 1.18
LIMCH1-211ENST00000509638 CHEK1O14757 476 aa22.39■■□□□ 1.18
LIMCH1-211ENST00000509638 ZNF266Q14584 549 aa22.39■■□□□ 1.18
LIMCH1-211ENST00000509638 ZNF345Q14585 488 aa22.39■■□□□ 1.18
LIMCH1-211ENST00000509638 MIC13Q5XKP0 118 aa22.39■■□□□ 1.18
LIMCH1-211ENST00000509638 NARS2Q96I59 477 aaKnown RBP22.39■■□□□ 1.18
LIMCH1-211ENST00000509638 TECRQ9NZ01 308 aaKnown RBP22.39■■□□□ 1.18
LIMCH1-211ENST00000509638 C1QBP02746 253 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 BMI1P35226 326 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 EIF2B2P49770 351 aaKnown RBP22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 DEFB114Q30KQ6 69 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 CD300EQ496F6 205 aaPredicted RBP22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 PRR20EP86478 221 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 PRR20CP86479 221 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 PRR20DP86480 221 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 PRR20BP86481 221 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 PRR20AP86496 221 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 SCGB1C1Q8TD33 95 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 PARD6GQ9BYG4 376 aaPredicted RBP22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 ARL6Q9H0F7 186 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 VSIRQ9H7M9 311 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 PXMP4Q9Y6I8 212 aa22.38■■□□□ 1.17
LIMCH1-211ENST00000509638 SORL1Q92673 2214 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms