RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 METTL26Q96S19 204 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 SAA2-SAA4A0A096LPE2 208 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 GLRXP35754 106 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 LGALS9BQ3B8N2 356 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 LGALS9CQ6DKI2 356 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 PRDM14Q9GZV8 571 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 WNT9BO14905 357 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 CRIPAKQ8N1N5 446 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 RNASE6Q93091 150 aaKnown RBP11.04□□□□□ -0.64
USP40-208ENST00000450966 IGHV3-21A0A0B4J1V1 117 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 hCG_38984A0A1B0GV85 526 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 IGKV1D-16P01601 117 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 MPV17P39210 176 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 ITLN1Q8WWA0 313 aa11.04□□□□□ -0.64
USP40-208ENST00000450966 H3BTX0 84 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 IGHG4P01861 327 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 TEX45Q8NA69 505 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 OR11H6Q8NGC7 330 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 PRSS29PA6NIE9 313 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 TAX1BP3O14907 124 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 ACYP1P07311 99 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 LYPD6BQ8NI32 183 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 TRAV8-3A0A0A6YYJ7 113 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 DDB2Q92466 427 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 NRN1LQ496H8 165 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 RNF183Q96D59 192 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 C16orf92Q96LL3 132 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 DEPPQ9NTK1 212 aa11.03□□□□□ -0.64
USP40-208ENST00000450966 IGKV1-8A0A0C4DH67 115 aa11.02□□□□□ -0.64
USP40-208ENST00000450966 D6R8Y8 96 aa11.02□□□□□ -0.64
USP40-208ENST00000450966 UBE2L6O14933 153 aa11.02□□□□□ -0.64
USP40-208ENST00000450966 Q6ZT83 130 aa11.02□□□□□ -0.64
USP40-208ENST00000450966 MRPL20Q9BYC9 149 aaKnown RBP11.02□□□□□ -0.64
USP40-208ENST00000450966 SYNJ2BPP57105 145 aa11.02□□□□□ -0.65
USP40-208ENST00000450966 SPACA3Q8IXA5 215 aa11.02□□□□□ -0.65
USP40-208ENST00000450966 CD59P13987 128 aa11.02□□□□□ -0.65
USP40-208ENST00000450966 VDAC2P45880 294 aaPredicted RBP11.02□□□□□ -0.65
USP40-208ENST00000450966 FAM106AQ4KMX7 169 aa11.02□□□□□ -0.65
USP40-208ENST00000450966 C1QL2Q7Z5L3 287 aa11.02□□□□□ -0.65
USP40-208ENST00000450966 RBM3P98179 157 aaKnown RBP11.02□□□□□ -0.65
USP40-208ENST00000450966 ZFP36L1Q07352 338 aaKnown RBP11.02□□□□□ -0.65
USP40-208ENST00000450966 F2Z2F3 143 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 CELA2AP08217 269 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 GFRA4Q9GZZ7 299 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 IGKV1D-42A0A075B6H8 117 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 ATP6V0E2Q8NHE4 81 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 DNAJC30Q96LL9 226 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 PAQR4Q8N4S7 273 aaPredicted RBP11.01□□□□□ -0.65
USP40-208ENST00000450966 PYGO2Q9BRQ0 406 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 BRCA1P38398 1863 aaKnown RBP11.01□□□□□ -0.65
USP40-208ENST00000450966 E9PLN8 166 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 ATOX1O00244 68 aa11.01□□□□□ -0.65
USP40-208ENST00000450966 RBMY1FQ15415 496 aaKnown RBP11□□□□□ -0.65
USP40-208ENST00000450966 NTN3O00634 580 aaPredicted RBP11□□□□□ -0.65
USP40-208ENST00000450966 VWCEQ96DN2 955 aa11□□□□□ -0.65
USP40-208ENST00000450966 MSRB2Q9Y3D2 182 aa11□□□□□ -0.65
USP40-208ENST00000450966 RFNGQ9Y644 331 aa11□□□□□ -0.65
USP40-208ENST00000450966 LTBP1Q14766 1721 aa11□□□□□ -0.65
USP40-208ENST00000450966 NPIPB5A8MRT5 1133 aa11□□□□□ -0.65
USP40-208ENST00000450966 SH2D6Q7Z4S9 175 aa11□□□□□ -0.65
USP40-208ENST00000450966 CCDC88CQ9P219 2028 aa11□□□□□ -0.65
USP40-208ENST00000450966 TPRP12270 2363 aaKnown RBP11□□□□□ -0.65
USP40-208ENST00000450966 MYO16Q9Y6X6 1858 aa11□□□□□ -0.65
USP40-208ENST00000450966 IGLV3-12A0A075B6K2 115 aa11□□□□□ -0.65
USP40-208ENST00000450966 FAM90A9PA6NNJ1 464 aa11□□□□□ -0.65
USP40-208ENST00000450966 FOXI2Q6ZQN5 318 aa11□□□□□ -0.65
USP40-208ENST00000450966 MCRIP2Q9BUT9 160 aaKnown RBP11□□□□□ -0.65
USP40-208ENST00000450966 IDI2-AS1Q9NZ38 188 aa11□□□□□ -0.65
USP40-208ENST00000450966 LSM4Q9Y4Z0 139 aaKnown RBP11□□□□□ -0.65
USP40-208ENST00000450966 DNAJC13O75165 2243 aa11□□□□□ -0.65
USP40-208ENST00000450966 TMEM229AB2RXF0 380 aa11□□□□□ -0.65
USP40-208ENST00000450966 IFI27P40305 119 aaPredicted RBP11□□□□□ -0.65
USP40-208ENST00000450966 HCP5Q6MZN7 132 aa11□□□□□ -0.65
USP40-208ENST00000450966 SCN8AQ9UQD0 1980 aa10.99□□□□□ -0.65
USP40-208ENST00000450966 FOXI3A8MTJ6 420 aaPredicted RBP10.99□□□□□ -0.65
USP40-208ENST00000450966 NEGR1Q7Z3B1 354 aa10.99□□□□□ -0.65
USP40-208ENST00000450966 FABP5P3A8MUU1 101 aa10.99□□□□□ -0.65
USP40-208ENST00000450966 C12orf74Q32Q52 190 aa10.99□□□□□ -0.65
USP40-208ENST00000450966 MRPL14Q6P1L8 145 aaKnown RBP10.99□□□□□ -0.65
USP40-208ENST00000450966 ASCL2Q99929 193 aa10.99□□□□□ -0.65
USP40-208ENST00000450966 RPL15P61313 204 aaKnown RBP10.99□□□□□ -0.65
USP40-208ENST00000450966 NMSQ5H8A3 153 aa10.99□□□□□ -0.65
USP40-208ENST00000450966 AMTNQ6UX39 209 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 TMEM14EPQ6UXP3 125 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 VOPP1Q96AW1 172 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 GBF1Q92538 1859 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 IGHV3-72A0A0B4J1Y9 119 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 IGKV3-11P04433 115 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 PTGDSP41222 190 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 FOXI1Q12951 378 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 SLC25A39Q9BZJ4 359 aaPredicted RBP10.98□□□□□ -0.65
USP40-208ENST00000450966 NPC2P61916 151 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 SCRT1Q9BWW7 348 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 DOCK5Q9H7D0 1870 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 KNCNA6PVL3 124 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 VWC2LB2RUY7 222 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 NPYP01303 97 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 EGR4Q05215 589 aa10.98□□□□□ -0.65
USP40-208ENST00000450966 MRPL23Q16540 153 aaKnown RBP10.98□□□□□ -0.65
USP40-208ENST00000450966 SRSF7Q16629 238 aaKnown RBP eCLIP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms