RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ALKAL2Q6UX46 152 aa11.03□□□□□ -0.64
SKA1-202ENST00000398452 STPG3Q8N7X2 389 aa11.03□□□□□ -0.64
SKA1-202ENST00000398452 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.03□□□□□ -0.64
SKA1-202ENST00000398452 ZNF491Q8N8L2 437 aa11.03□□□□□ -0.64
SKA1-202ENST00000398452 MRPL36Q9P0J6 103 aaKnown RBP11.03□□□□□ -0.64
SKA1-202ENST00000398452 PEF1Q9UBV8 284 aaKnown RBP11.03□□□□□ -0.64
SKA1-202ENST00000398452 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.02□□□□□ -0.65
SKA1-202ENST00000398452 ANKRD34BA5PLL1 514 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 YIF1AO95070 293 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 TOMM40O96008 361 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 LINC00869P0C866 280 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 MDKP21741 143 aaPredicted RBP11.02□□□□□ -0.65
SKA1-202ENST00000398452 YPEL3P61236 119 aaPredicted RBP11.02□□□□□ -0.65
SKA1-202ENST00000398452 MIC13Q5XKP0 118 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 ZNF343Q6P1L6 599 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 ZNF600Q6ZNG1 722 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 RNF152Q8N8N0 203 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 OR51G1Q8NGK1 321 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 OR1L4Q8NGR5 311 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 RNF141Q8WVD5 230 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 OR5B12Q96R08 314 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 PFDN5Q99471 154 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 SH3BGRL3Q9H299 93 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 SLC39A9Q9NUM3 307 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 PFDN2Q9UHV9 154 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 SLC45A2Q9UMX9 530 aa11.02□□□□□ -0.65
SKA1-202ENST00000398452 A0A1W2PPV4 95 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 TEX46H3BTG2 121 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 COX7A2P2O60397 106 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 GGCTO75223 188 aaKnown RBP11.01□□□□□ -0.65
SKA1-202ENST00000398452 LGALS1P09382 135 aaKnown RBP11.01□□□□□ -0.65
SKA1-202ENST00000398452 LYZP61626 148 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 ZNF90Q03938 601 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 TMEM41BQ5BJD5 291 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 PXDC1Q5TGL8 231 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 ZNF680Q8NEM1 530 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 WFDC12Q8WWY7 111 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 DPF1Q92782 380 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 CCDC140Q96MF4 163 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 RNF2Q99496 336 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 PBDC1Q9BVG4 233 aa11.01□□□□□ -0.65
SKA1-202ENST00000398452 TSSC4Q9Y5U2 329 aaPredicted RBP11.01□□□□□ -0.65
SKA1-202ENST00000398452 IGKV1D-37A0A075B6S9 117 aa11□□□□□ -0.65
SKA1-202ENST00000398452 IGKV1OR2-108A0A075B7D4 117 aa11□□□□□ -0.65
SKA1-202ENST00000398452 OR5G3P0C626 314 aa11□□□□□ -0.65
SKA1-202ENST00000398452 PSG1P11464 419 aa11□□□□□ -0.65
SKA1-202ENST00000398452 M6PRP20645 277 aa11□□□□□ -0.65
SKA1-202ENST00000398452 CDX1P47902 265 aaPredicted RBP11□□□□□ -0.65
SKA1-202ENST00000398452 RAB2AP61019 212 aa11□□□□□ -0.65
SKA1-202ENST00000398452 RPEL1Q2QD12 228 aa11□□□□□ -0.65
SKA1-202ENST00000398452 DPPA3Q6W0C5 159 aa11□□□□□ -0.65
SKA1-202ENST00000398452 C12orf54Q6X4T0 127 aa11□□□□□ -0.65
SKA1-202ENST00000398452 C11orf44Q8N8P7 122 aa11□□□□□ -0.65
SKA1-202ENST00000398452 OR10G4Q8NGN3 311 aa11□□□□□ -0.65
SKA1-202ENST00000398452 OR10G9Q8NGN4 311 aa11□□□□□ -0.65
SKA1-202ENST00000398452 OR10G7Q8NGN6 311 aa11□□□□□ -0.65
SKA1-202ENST00000398452 OR1B1Q8NGR6 318 aa11□□□□□ -0.65
SKA1-202ENST00000398452 RNF24Q9Y225 148 aa11□□□□□ -0.65
SKA1-202ENST00000398452 ELOA3CA0A087WX78 387 aaPredicted RBP10.99□□□□□ -0.65
SKA1-202ENST00000398452 ZNF705EA8MWA4 302 aaPredicted RBP10.99□□□□□ -0.65
SKA1-202ENST00000398452 PPP5D1E7EU14 171 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 BMPR1BO00238 502 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 IGKV1-17P01599 117 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 IL4P05112 153 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 CTSGP08311 255 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 ORM2P19652 201 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 GATA2P23769 480 aaPredicted RBP10.99□□□□□ -0.65
SKA1-202ENST00000398452 SULT1A2P50226 295 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 PROK1P58294 105 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 RHOBP62745 196 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 BLOC1S1P78537 153 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 FAM106AQ4KMX7 169 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 KLHL30-AS1Q8NEE0 82 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 FAM213BQ8TBF2 198 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 MYOZ3Q8TDC0 251 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 C4orf3Q8WVX3 66 aa10.99□□□□□ -0.65
SKA1-202ENST00000398452 NARS2Q96I59 477 aaKnown RBP10.99□□□□□ -0.65
SKA1-202ENST00000398452 ACTR3CQ9C0K3 210 aaPredicted RBP10.99□□□□□ -0.65
SKA1-202ENST00000398452 F8W735 103 aaPredicted RBP10.98□□□□□ -0.65
SKA1-202ENST00000398452 HYPMO75409 117 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 HSPB1P04792 205 aaKnown RBP10.98□□□□□ -0.65
SKA1-202ENST00000398452 CD28P10747 220 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 ZP3P21754 424 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 FAM74A1Q5RGS3 127 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 C10orf113Q5VZT2 155 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 FAM122CQ6P4D5 195 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 GATAD1Q8WUU5 269 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 RNF125Q96EQ8 232 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 CHRDL1Q9BU40 450 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 DNAJC4Q9NNZ3 241 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 DOK5Q9P104 306 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 HIGD1AQ9Y241 93 aa10.98□□□□□ -0.65
SKA1-202ENST00000398452 PUS1Q9Y606 427 aaKnown RBP eCLIP10.98□□□□□ -0.65
SKA1-202ENST00000398452 IGHV3-35A0A0C4DH35 117 aa10.97□□□□□ -0.65
SKA1-202ENST00000398452 NDUFA4O00483 81 aa10.97□□□□□ -0.65
SKA1-202ENST00000398452 CDC34P49427 236 aaPredicted RBP10.97□□□□□ -0.65
SKA1-202ENST00000398452 TAS2R45P59539 299 aa10.97□□□□□ -0.65
SKA1-202ENST00000398452 METTL26Q96S19 204 aa10.97□□□□□ -0.65
SKA1-202ENST00000398452 C20orf24Q9BUV8 137 aa10.97□□□□□ -0.65
SKA1-202ENST00000398452 MRPL32Q9BYC8 188 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms