RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PIGBOS1A0A0B4J2F0 54 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 K7EMT4 169 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 TMEM50AO95807 157 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 NHLRC4P0CG21 123 aaPredicted RBP11.89□□□□□ -0.51
CLN3-201ENST00000333496 OPRK1P41145 380 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 EIF5AP63241 154 aaKnown RBP11.89□□□□□ -0.51
CLN3-201ENST00000333496 RELQ04864 619 aaPredicted RBP11.89□□□□□ -0.51
CLN3-201ENST00000333496 IAH1Q2TAA2 248 aaPredicted RBP11.89□□□□□ -0.51
CLN3-201ENST00000333496 SLC24A4Q8NFF2 622 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 AQP10Q96PS8 301 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 RBKSQ9H477 322 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 CACFD1Q9UGQ2 172 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 RAB19A4D1S5 217 aa11.88□□□□□ -0.51
CLN3-201ENST00000333496 C15orf62A8K5M9 175 aa11.88□□□□□ -0.51
CLN3-201ENST00000333496 TEX46H3BTG2 121 aa11.88□□□□□ -0.51
CLN3-201ENST00000333496 NPBWR1P48145 328 aa11.88□□□□□ -0.51
CLN3-201ENST00000333496 CD81P60033 236 aa11.88□□□□□ -0.51
CLN3-201ENST00000333496 IL15RAQ13261 267 aa11.88□□□□□ -0.51
CLN3-201ENST00000333496 GUCA2BQ16661 112 aa11.88□□□□□ -0.51
CLN3-201ENST00000333496 SCAF4O95104 1147 aaKnown RBP11.87□□□□□ -0.51
CLN3-201ENST00000333496 FAM74A1Q5RGS3 127 aa11.87□□□□□ -0.51
CLN3-201ENST00000333496 OR4X1Q8NH49 305 aa11.87□□□□□ -0.51
CLN3-201ENST00000333496 DTD1Q8TEA8 209 aa11.87□□□□□ -0.51
CLN3-201ENST00000333496 HIPK2Q9H2X6 1198 aa11.87□□□□□ -0.51
CLN3-201ENST00000333496 GSKIPQ9P0R6 139 aa11.87□□□□□ -0.51
CLN3-201ENST00000333496 LOC105371267A0A1B0GV96 52 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 TAAR5O14804 337 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 CLN5O75503 358 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 YIF1AO95070 293 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 SLC25A6P12236 298 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 NPY1RP25929 384 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 TOMM20LQ6UXN7 152 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 BAP18Q8IXM2 172 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 RNASEH2CQ8TDP1 164 aaKnown RBP11.86□□□□□ -0.51
CLN3-201ENST00000333496 RNF141Q8WVD5 230 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 RNF126Q9BV68 326 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 WFDC10AQ9H1F0 79 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 TRAV25A0A0B4J276 109 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 EIF5AL1Q6IS14 154 aaKnown RBP11.86□□□□□ -0.51
CLN3-201ENST00000333496 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.86□□□□□ -0.51
CLN3-201ENST00000333496 ZFAND3Q9H8U3 227 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 SMPXQ9UHP9 88 aa11.86□□□□□ -0.51
CLN3-201ENST00000333496 H0YIZ8 118 aa11.85□□□□□ -0.51
CLN3-201ENST00000333496 RAB32Q13637 225 aa11.85□□□□□ -0.51
CLN3-201ENST00000333496 ZNF600Q6ZNG1 722 aa11.85□□□□□ -0.51
CLN3-201ENST00000333496 PUS1Q9Y606 427 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLN3-201ENST00000333496 U3KQK5 164 aa11.85□□□□□ -0.51
CLN3-201ENST00000333496 IGHV3-49A0A0A0MS15 119 aa11.84□□□□□ -0.51
CLN3-201ENST00000333496 IGHV7-4-1A0A0J9YVY3 117 aa11.84□□□□□ -0.51
CLN3-201ENST00000333496 CHEK1O14757 476 aa11.84□□□□□ -0.51
CLN3-201ENST00000333496 IFNA10P01566 189 aa11.84□□□□□ -0.51
CLN3-201ENST00000333496 IGKV1-17P01599 117 aa11.84□□□□□ -0.51
CLN3-201ENST00000333496 RBPMS2Q6ZRY4 209 aaKnown RBP11.84□□□□□ -0.51
CLN3-201ENST00000333496 DEFB125Q8N687 156 aa11.84□□□□□ -0.51
CLN3-201ENST00000333496 CYTL1Q9NRR1 136 aa11.84□□□□□ -0.51
CLN3-201ENST00000333496 OR11H12B2RN74 326 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 FAM90A26D6RGX4 464 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 TSPAN4O14817 238 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 S100A10P60903 97 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 LINC00322Q6ZN03 302 aaPredicted RBP11.83□□□□□ -0.52
CLN3-201ENST00000333496 TMEM116Q8NCL8 245 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 OR4D5Q8NGN0 318 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 RNF2Q99496 336 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 TM2D3Q9BRN9 247 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 RHPN1-AS1Q9BWJ2 59 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 TUBA4BQ9H853 241 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 OR5AC2Q9NZP5 309 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 TENM3Q9P273 2699 aa11.83□□□□□ -0.52
CLN3-201ENST00000333496 IGHV3OR16-13A0A075B7E8 117 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 IGHV3-74A0A0B4J1X5 117 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 APOHP02749 345 aaPredicted RBP11.82□□□□□ -0.52
CLN3-201ENST00000333496 IGLC1P0CG04 106 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 IAPPP10997 89 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 RND2P52198 227 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 TIGITQ495A1 244 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 SPAG8Q99932 426 aaPredicted RBP11.82□□□□□ -0.52
CLN3-201ENST00000333496 DNAH7Q8WXX0 4024 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 RBMY1BA6NDE4 496 aaKnown RBP11.82□□□□□ -0.52
CLN3-201ENST00000333496 RBMY1EA6NEQ0 496 aaKnown RBP11.82□□□□□ -0.52
CLN3-201ENST00000333496 SCGB1D2O95969 90 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 APOC3P02656 99 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 MBPP02686 304 aaPredicted RBP11.82□□□□□ -0.52
CLN3-201ENST00000333496 RBMY1DP0C7P1 496 aaKnown RBP11.82□□□□□ -0.52
CLN3-201ENST00000333496 BTN1A1Q13410 526 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 HAGHQ16775 308 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 SLC16A13Q7RTY0 426 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 OR1S2Q8NGQ3 325 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 NPIPB3Q92617 1050 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 SAT2Q96F10 170 aaPredicted RBP11.82□□□□□ -0.52
CLN3-201ENST00000333496 GINS3Q9BRX5 216 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 MAGT1Q9H0U3 335 aa11.82□□□□□ -0.52
CLN3-201ENST00000333496 TRAV30A0A087WSZ9 112 aa11.81□□□□□ -0.52
CLN3-201ENST00000333496 SYNGR2O43760 224 aa11.81□□□□□ -0.52
CLN3-201ENST00000333496 FAM90A2PQ658T7 463 aa11.81□□□□□ -0.52
CLN3-201ENST00000333496 ETFRF1Q6IPR1 90 aa11.81□□□□□ -0.52
CLN3-201ENST00000333496 LILRB2Q8N423 598 aa11.81□□□□□ -0.52
CLN3-201ENST00000333496 VSIRQ9H7M9 311 aa11.81□□□□□ -0.52
CLN3-201ENST00000333496 SRD5A3Q9H8P0 318 aa11.81□□□□□ -0.52
CLN3-201ENST00000333496 LSM5Q9Y4Y9 91 aaKnown RBP11.81□□□□□ -0.52
CLN3-201ENST00000333496 K7EPK0 472 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms