RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 PRSS57Q6UWY2 283 aa12.33□□□□□ -0.44
LSM6-201ENST00000296581 MEGF9Q9H1U4 602 aa12.33□□□□□ -0.44
LSM6-201ENST00000296581 CENPEQ02224 2701 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 VPS13CQ709C8 3753 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 CTXND1A0A1B0GTU2 59 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 K7EP13 123 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 CORTO00230 105 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 CRYGCP07315 174 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 SELENOTP62341 195 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 MIC13Q5XKP0 118 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 BRD3OSQ6XYD6 125 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 ELOVL1Q9BW60 279 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 ABCA12Q86UK0 2595 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 MAP1LC3B2A6NCE7 125 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 HSBP1L1C9JCN9 74 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 RNF223E7ERA6 249 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 APELAP0DMC3 54 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 CX3CL1P78423 397 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 PRR20EP86478 221 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 PRR20CP86479 221 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 PRR20DP86480 221 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 PRR20BP86481 221 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 PRR20AP86496 221 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 HIST2H2BCQ6DN03 193 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 LCN15Q6UWW0 184 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 KRTAP1-3Q8IUG1 177 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 OR2T6Q8NHC8 308 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 MAP1LC3BQ9GZQ8 125 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 SLC39A9Q9NUM3 307 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 SLC45A2Q9UMX9 530 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 CR1P17927 2039 aa12.32□□□□□ -0.44
LSM6-201ENST00000296581 A0A0U1RQK1 487 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 J3QLI3 93 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 AVPP01185 164 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 SRP19P09132 144 aaKnown RBP12.31□□□□□ -0.44
LSM6-201ENST00000296581 RND2P52198 227 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 CEBPGP53567 150 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 KLF17Q5JT82 389 aaPredicted RBP12.31□□□□□ -0.44
LSM6-201ENST00000296581 C19orf35Q6ZS72 473 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 STPG3Q8N7X2 389 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 NAV2Q8IVL1 2488 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 C20orf202A1L168 122 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 XKRY2A2RUG3 117 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 RBFOX3A6NFN3 312 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 HLA-DRB1P01911 266 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 SMIM15Q7Z3B0 74 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 ARPC1AQ92747 370 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 NIPSNAP3BQ9BS92 247 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 SLC25A22Q9H936 323 aa12.31□□□□□ -0.44
LSM6-201ENST00000296581 LINC00869P0C866 280 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 NDPQ00604 133 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 PMS2P11Q13670 270 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 BATFQ16520 125 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 GCSAMLQ5JQS6 135 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 THAP8Q8NA92 274 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 TMEM18Q96B42 140 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 HELZ2Q9BYK8 2649 aaKnown RBP12.3□□□□□ -0.44
LSM6-201ENST00000296581 TRBV24-1A0A075B6N3 115 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 IGHV7-81A0A0B4J1V7 117 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 OR10J1P30954 320 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 TFPI2P48307 235 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 CDC34P49427 236 aaPredicted RBP12.3□□□□□ -0.44
LSM6-201ENST00000296581 FGF8P55075 233 aaPredicted RBP12.3□□□□□ -0.44
LSM6-201ENST00000296581 COL5A1-AS1Q5SY13 56 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 PIFOQ8TCI5 191 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 ACY3Q96HD9 319 aa12.3□□□□□ -0.44
LSM6-201ENST00000296581 MRPL36Q9P0J6 103 aaKnown RBP12.3□□□□□ -0.44
LSM6-201ENST00000296581 CCL25O15444 150 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 SCGB1D1O95968 90 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 IGHV4-31P0DP07 118 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 ASPHD1Q5U4P2 390 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 NUDT10Q8NFP7 164 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 OR1L6Q8NGR2 347 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 NPIPB3Q92617 1050 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 FAM103A1Q9BTL3 118 aaKnown RBP12.29□□□□□ -0.44
LSM6-201ENST00000296581 WNT10AQ9GZT5 417 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 APCP25054 2843 aa12.29□□□□□ -0.44
LSM6-201ENST00000296581 NPIPB5A8MRT5 1133 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 B4DEV8 164 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 PPP5D1E7EU14 171 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 PPBPP02775 128 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 PTTG1IPP53801 180 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 RNF151Q2KHN1 245 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 ZNF506Q5JVG8 444 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 CYB561D1Q8N8Q1 229 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 MAPK1IP1LQ8NDC0 245 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 RASL11BQ9BPW5 248 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 SLC25A33Q9BSK2 321 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 IGKV1D-37A0A075B6S9 117 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 TGFAP01135 160 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 DEFA4P12838 97 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 TMEM249Q2WGJ8 235 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 TMEM116Q8NCL8 245 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 Q96MF0 132 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 MIEN1Q9BRT3 115 aa12.28□□□□□ -0.44
LSM6-201ENST00000296581 CSMD2Q7Z408 3487 aa12.27□□□□□ -0.44
LSM6-201ENST00000296581 CLDN34H7C241 214 aa12.27□□□□□ -0.44
LSM6-201ENST00000296581 MT-CO2P00403 227 aa12.27□□□□□ -0.44
LSM6-201ENST00000296581 EGR2P11161 476 aaPredicted RBP12.27□□□□□ -0.44
LSM6-201ENST00000296581 CYP2G1PQ6ZSU1 146 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms