RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 C2orf83Q53S99 150 aa12.92□□□□□ -0.34
SHKBP1-227ENST00000602011 TMEM229BQ8NBD8 167 aa12.92□□□□□ -0.34
SHKBP1-227ENST00000602011 BCL7BQ9BQE9 202 aa12.92□□□□□ -0.34
SHKBP1-227ENST00000602011 PFDN2Q9UHV9 154 aa12.92□□□□□ -0.34
SHKBP1-227ENST00000602011 GSTZ1O43708 216 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 CD74P04233 296 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 ZNF688P0C7X2 276 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 PI3P19957 117 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 NPY1RP25929 384 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 NCS1P62166 190 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 DHODHQ02127 395 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 DHRS2Q13268 280 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 GPR107Q5VW38 600 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 C16orf54Q6UWD8 224 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 RAB40CQ96S21 281 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 HEYLQ9NQ87 328 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 X6R8D5 127 aa12.91□□□□□ -0.34
SHKBP1-227ENST00000602011 FAT2Q9NYQ8 4349 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 GABARAPO95166 117 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 ZNF182P17025 639 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 NUP62P37198 522 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 PPP5CP53041 499 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 TMBIM6P55061 237 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 VBP1P61758 197 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 MRPS10P82664 201 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 SURF2Q15527 256 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 MLANAQ16655 118 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 ACTL10Q5JWF8 245 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 CSNK1G2-AS1Q8NCQ2 148 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 OR52I2Q8NH67 350 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 TMEM222Q9H0R3 208 aa12.9□□□□□ -0.34
SHKBP1-227ENST00000602011 IGHV4-4A0A075B6R2 117 aa12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 TEX13DA0A0J9YY54 714 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 RAB3DO95716 219 aa12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 IGLC1P0CG04 106 aa12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 MEF2DQ14814 521 aa12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 SP6Q3SY56 376 aa12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 TIGITQ495A1 244 aa12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 CLVS1Q8IUQ0 354 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 RAB2BQ8WUD1 216 aa12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 RBPMSQ93062 196 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 MRPL36Q9P0J6 103 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 C14orf166Q9Y224 244 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-227ENST00000602011 DNAH2Q9P225 4427 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 KNCNA6PVL3 124 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 NOL3O60936 208 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 P0DMU3 169 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 FAM231AP0DMU4 169 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 FAM231CP0DMU5 169 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 OR10J1P30954 320 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 ATP5IP56385 69 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 CTF1Q16619 201 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 SCGB2B2Q4G0G5 96 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 STEAP1BQ6NZ63 245 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 PRSS54Q6PEW0 395 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 Q6ZRM9 215 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 Q6ZTC4 211 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 OR13C8Q8NGS7 320 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 GLMPQ8WWB7 406 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 RABL2AQ9UBK7 228 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 EXTL2Q9UBQ6 330 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 RABL2BQ9UNT1 228 aa12.88□□□□□ -0.35
SHKBP1-227ENST00000602011 PKHD1P08F94 4074 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 ELOA3CA0A087WX78 387 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 TMEM189A5PLL7 270 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 SMIM9A6NGZ8 99 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 GABARAPH6UMI1 98 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 RD3LP0DJH9 198 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 C4BPBP20851 252 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 PSMG4Q5JS54 123 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 SLC24A4Q8NFF2 622 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 GLYATL2Q8WU03 294 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 NEU1Q99519 415 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 NRN1Q9NPD7 142 aa12.87□□□□□ -0.35
SHKBP1-227ENST00000602011 DEFB131BA0A096LNP1 70 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 PIGBOS1A0A0B4J2F0 54 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 DISC1C4P0D8 188 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 BUB3O43684 328 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 AMBPP02760 352 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 RND2P52198 227 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 MARCH1Q8TCQ1 289 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 FAM210BQ96KR6 192 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 NDUFAF3Q9BU61 184 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 NAA50Q9GZZ1 169 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 NAA60Q9H7X0 242 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 NDUFA13Q9P0J0 144 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 KCNIP3Q9Y2W7 256 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 U3KQ87 197 aa12.86□□□□□ -0.35
SHKBP1-227ENST00000602011 DNAH17Q9UFH2 4485 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 A0A0G2JRQ6 117 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 CEBPZOSA8MTT3 80 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 FAM90A26D6RGX4 464 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 H3BMM0 161 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 TOMM40O96008 361 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 IL4P05112 153 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 OR5AC1P0C628 307 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 NKX2-1P43699 371 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 POM121L12Q8N7R1 296 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 IL22RA2Q969J5 263 aa12.85□□□□□ -0.35
SHKBP1-227ENST00000602011 CLUHP3Q96NS8 147 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms