RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CHTOPQ9Y3Y2 248 aaKnown RBP5.08□□□□□ -1.6
VPS53-213ENST00000572334 RBMY1BA6NDE4 496 aaKnown RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 C5orf51A6NDU8 294 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 RBMY1EA6NEQ0 496 aaKnown RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 HSBP1L1C9JCN9 74 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 MED6O75586 246 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 HLA-AP01891 365 aaKnown RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 IFNA6P05013 189 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 CD7P09564 240 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 OR9G9P0C7N8 305 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 RBMY1DP0C7P1 496 aaKnown RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 HIST1H1DP16402 221 aaKnown RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 ADCYAP1P18509 176 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 AADACP22760 399 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 NDUFA6P56556 154 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 UBE2KP61086 200 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 RPL30P62888 115 aaKnown RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 PRR20EP86478 221 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 PRR20CP86479 221 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 PRR20DP86480 221 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 PRR20BP86481 221 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 PRR20AP86496 221 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 JOSD1Q15040 202 aaPredicted RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 PYY3Q5JQD4 70 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 C10orf55Q5SWW7 151 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 PRSS54Q6PEW0 395 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 C19orf35Q6ZS72 473 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 SLC25A42Q86VD7 318 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 TEX45Q8NA69 505 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 OR4C16Q8NGL9 310 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 OR10D4PQ8NGN7 298 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 MITD1Q8WV92 249 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 PPP1R1CQ8WVI7 109 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 SRSF12Q8WXF0 261 aaKnown RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 GALNT14Q96FL9 552 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 ACY3Q96HD9 319 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 USMG5Q96IX5 58 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 SPATA25Q9BR10 227 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 WFDC10AQ9H1F0 79 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 HIPK2Q9H2X6 1198 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 HRH4Q9H3N8 390 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 AUNIPQ9H7T9 357 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 ZNF430Q9H8G1 570 aaPredicted RBP5.07□□□□□ -1.6
VPS53-213ENST00000572334 PLEKHA2Q9HB19 425 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 TMEM242Q9NWH2 141 aa5.07□□□□□ -1.6
VPS53-213ENST00000572334 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.06□□□□□ -1.6
VPS53-213ENST00000572334 TRAV14DV4A0A0A6YYC5 116 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 IGKV1D-13A0A0B4J2D9 117 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 CGB1A6NKQ9 187 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 A8MWP6 167 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 TEX22C9J3V5 150 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 UMAD1C9J7I0 102 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 H0Y980 276 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 DLEU1O43261 78 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 HBE1P02100 147 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 SEC11BP0C7V7 166 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 SAA1P0DJI8 122 aaPredicted RBP5.06□□□□□ -1.6
VPS53-213ENST00000572334 IGKV1-13P0DP09 117 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 RAB6AP20340 208 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 CEBPGP53567 150 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 RHOGP84095 191 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 TNXAQ16473 311 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 ZNF674Q2M3X9 581 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 RPEL1Q2QD12 228 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 KLK9Q2XQG4 91 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 DEFB114Q30KQ6 69 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 CD300EQ496F6 205 aaPredicted RBP5.06□□□□□ -1.6
VPS53-213ENST00000572334 SOHLH1Q5JUK2 328 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 GGNBP1Q5YKI7 109 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 TTC9CQ8N5M4 171 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 OR13C8Q8NGS7 320 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 OR10J5Q8NHC4 309 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 DTD1Q8TEA8 209 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 TMEM18Q96B42 140 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 PACRGQ96M98 296 aaPredicted RBP5.06□□□□□ -1.6
VPS53-213ENST00000572334 FANCD2OSQ96PS1 177 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 FAM110AQ9BQ89 295 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 CTDSP1Q9GZU7 261 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 EIF5A2Q9GZV4 153 aaKnown RBP5.06□□□□□ -1.6
VPS53-213ENST00000572334 PLEKHA3Q9HB20 300 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 KLK9Q9UKQ9 250 aa5.06□□□□□ -1.6
VPS53-213ENST00000572334 HECTD4Q9Y4D8 3996 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 C2orf70A6NJV1 201 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 FAM223BA6NKX1 122 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 IL6RP08887 468 aaPredicted RBP5.05□□□□□ -1.6
VPS53-213ENST00000572334 MYOD1P15172 320 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 SNCAP37840 140 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 KIR2DS2P43631 304 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 ERVFC1-1P60608 527 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 DHRS2Q13268 280 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 ARL6IP1Q15041 203 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 GUK1Q16774 197 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 RTL8BQ17RB0 113 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 TMEM241Q24JQ0 296 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 VMA21Q3ZAQ7 101 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 LCN12Q6JVE5 192 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 BTNL8Q6UX41 500 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 TMED4Q7Z7H5 227 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 FAM223AQ8IWN6 122 aa5.05□□□□□ -1.6
VPS53-213ENST00000572334 VKORC1L1Q8N0U8 176 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 132.6 ms