RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NARS2Q96I59 477 aaKnown RBP12.43□□□□□ -0.42
CLN3-216ENST00000565316 NAA60Q9H7X0 242 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 ZNF688P0C7X2 276 aa12.42□□□□□ -0.42
CLN3-216ENST00000565316 SLC25A4P12235 298 aa12.42□□□□□ -0.42
CLN3-216ENST00000565316 YPEL3P61236 119 aaPredicted RBP12.42□□□□□ -0.42
CLN3-216ENST00000565316 MRPS10P82664 201 aaKnown RBP12.42□□□□□ -0.42
CLN3-216ENST00000565316 DHODHQ02127 395 aa12.42□□□□□ -0.42
CLN3-216ENST00000565316 GPR107Q5VW38 600 aa12.42□□□□□ -0.42
CLN3-216ENST00000565316 C16orf54Q6UWD8 224 aa12.42□□□□□ -0.42
CLN3-216ENST00000565316 RNASEH2CQ8TDP1 164 aaKnown RBP12.42□□□□□ -0.42
CLN3-216ENST00000565316 GPR146Q96CH1 333 aa12.42□□□□□ -0.42
CLN3-216ENST00000565316 HEYLQ9NQ87 328 aaPredicted RBP12.42□□□□□ -0.42
CLN3-216ENST00000565316 C14orf166Q9Y224 244 aaKnown RBP12.42□□□□□ -0.42
CLN3-216ENST00000565316 AGRNO00468 2067 aa12.42□□□□□ -0.42
CLN3-216ENST00000565316 IGHV4-28A0A0C4DH34 117 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 HELTA6NFD8 242 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 KNCNA6PVL3 124 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 C11orf94C9JXX5 98 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 MIFP14174 115 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 C4BPBP20851 252 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 PRR20EP86478 221 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 PRR20CP86479 221 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 PRR20DP86480 221 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 PRR20BP86481 221 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 PRR20AP86496 221 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 CSNK1G2-AS1Q8NCQ2 148 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 TMEM170AQ8WVE7 144 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 GLMPQ8WWB7 406 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 CACNG5Q9UF02 275 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 APLNQ9ULZ1 77 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 GPR132Q9UNW8 380 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 TMEM56-RWDD3S4R434 201 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 X6R8D5 127 aa12.41□□□□□ -0.42
CLN3-216ENST00000565316 CRYM-AS1A6NIL9 109 aa12.4□□□□□ -0.42
CLN3-216ENST00000565316 HNRNPCP07910 306 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLN3-216ENST00000565316 OR10J1P30954 320 aa12.4□□□□□ -0.42
CLN3-216ENST00000565316 EIF2B2P49770 351 aaKnown RBP12.4□□□□□ -0.42
CLN3-216ENST00000565316 RND2P52198 227 aa12.4□□□□□ -0.42
CLN3-216ENST00000565316 FAAP20Q6NZ36 180 aa12.4□□□□□ -0.42
CLN3-216ENST00000565316 Q8WTZ3 238 aa12.4□□□□□ -0.42
CLN3-216ENST00000565316 SMIM4Q8WVI0 70 aa12.4□□□□□ -0.42
CLN3-216ENST00000565316 DISC1C4P0D8 188 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 CTDSP2O14595 271 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 AP2S1P53680 142 aaPredicted RBP12.39□□□□□ -0.43
CLN3-216ENST00000565316 DHRS2Q13268 280 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 ACTL10Q5JWF8 245 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 TMEM268Q5VZI3 342 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 SLC24A4Q8NFF2 622 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 RAB40CQ96S21 281 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 SEPSECSQ9HD40 501 aaKnown RBP12.39□□□□□ -0.43
CLN3-216ENST00000565316 DNAH17Q9UFH2 4485 aa12.39□□□□□ -0.43
CLN3-216ENST00000565316 IGLL5B9A064 214 aa12.38□□□□□ -0.43
CLN3-216ENST00000565316 CTDSPLO15194 276 aa12.38□□□□□ -0.43
CLN3-216ENST00000565316 NXPH3O95157 252 aa12.38□□□□□ -0.43
CLN3-216ENST00000565316 HLA-DMBP28068 263 aa12.38□□□□□ -0.43
CLN3-216ENST00000565316 USF2Q15853 346 aaPredicted RBP12.38□□□□□ -0.43
CLN3-216ENST00000565316 NMSQ5H8A3 153 aa12.38□□□□□ -0.43
CLN3-216ENST00000565316 OR4C16Q8NGL9 310 aa12.38□□□□□ -0.43
CLN3-216ENST00000565316 CACFD1Q9UGQ2 172 aa12.38□□□□□ -0.43
CLN3-216ENST00000565316 ELOA3CA0A087WX78 387 aaPredicted RBP12.37□□□□□ -0.43
CLN3-216ENST00000565316 CEBPZOSA8MTT3 80 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 RGS5O15539 181 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 AKAIN1P0CW23 69 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 PSMG4Q5JS54 123 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 ETFRF1Q6IPR1 90 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 NOXA1Q86UR1 476 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 NPIPB3Q92617 1050 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 IL22RA2Q969J5 263 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 PRRT1Q99946 306 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 TBC1D24Q9ULP9 559 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 FAM90A26D6RGX4 464 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 BUB3O43684 328 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 TOMM40O96008 361 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 IL4P05112 153 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 NPY1RP25929 384 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 ALDH3B2P48448 385 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 SPCS2Q15005 226 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 CLEC5AQ9NY25 188 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 RABL2AQ9UBK7 228 aaPredicted RBP12.37□□□□□ -0.43
CLN3-216ENST00000565316 RABL2BQ9UNT1 228 aa12.37□□□□□ -0.43
CLN3-216ENST00000565316 TRAV10A0A0B4J240 114 aa12.36□□□□□ -0.43
CLN3-216ENST00000565316 RD3LP0DJH9 198 aa12.36□□□□□ -0.43
CLN3-216ENST00000565316 SULT1A3P0DMM9 295 aa12.36□□□□□ -0.43
CLN3-216ENST00000565316 SULT1A4P0DMN0 295 aa12.36□□□□□ -0.43
CLN3-216ENST00000565316 Q6ZTC4 211 aa12.36□□□□□ -0.43
CLN3-216ENST00000565316 OR51S1Q8NGJ8 323 aa12.36□□□□□ -0.43
CLN3-216ENST00000565316 NRN1Q9NPD7 142 aa12.36□□□□□ -0.43
CLN3-216ENST00000565316 DNAH2Q9P225 4427 aa12.35□□□□□ -0.43
CLN3-216ENST00000565316 GSTZ1O43708 216 aaPredicted RBP12.35□□□□□ -0.43
CLN3-216ENST00000565316 SNRPD3P62318 126 aaKnown RBP12.35□□□□□ -0.43
CLN3-216ENST00000565316 CLVS1Q8IUQ0 354 aaPredicted RBP12.35□□□□□ -0.43
CLN3-216ENST00000565316 ACY3Q96HD9 319 aa12.35□□□□□ -0.43
CLN3-216ENST00000565316 MRPS26Q9BYN8 205 aaKnown RBP12.35□□□□□ -0.43
CLN3-216ENST00000565316 HSPB7Q9UBY9 170 aa12.35□□□□□ -0.43
CLN3-216ENST00000565316 KCNIP3Q9Y2W7 256 aa12.35□□□□□ -0.43
CLN3-216ENST00000565316 U3KQ87 197 aa12.35□□□□□ -0.43
CLN3-216ENST00000565316 FAT2Q9NYQ8 4349 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 ANKRD20A5PA0PJZ0 165 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 H3BMM0 161 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 PSG1P11464 419 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms