RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 C3orf79P0CE67 100 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 PSG1P11464 419 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 ZNF138P52744 262 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 NMSQ5H8A3 153 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 TCF24Q7RTU0 167 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 LSM10Q969L4 123 aaKnown RBP4.53□□□□□ -1.68
LIMA1-203ENST00000547825 SCNM1Q9BWG6 230 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 HSPB7Q9UBY9 170 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 LOXL2Q9Y4K0 774 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 OR51B2Q9Y5P1 312 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 IGHV3-35A0A0C4DH35 117 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 NUPR1O60356 82 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 PRDX2P32119 198 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 RPL15P61313 204 aaKnown RBP4.53□□□□□ -1.68
LIMA1-203ENST00000547825 SMAGPQ0VAQ4 97 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 NRN1LQ496H8 165 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 ZNF645Q8N7E2 425 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 CFAP46Q8IYW2 2715 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 A0A087X0K7 114 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.53□□□□□ -1.68
LIMA1-203ENST00000547825 A8MWL6 223 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 F2Z2F3 143 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 FXYD7P58549 80 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 ZNF726P1Q15940 193 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 TNXAQ16473 311 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 KIR3DL3Q8N743 410 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 STPG4Q8N801 248 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 LRTM2Q8N967 370 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 TMEM242Q9NWH2 141 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 UFC1Q9Y3C8 167 aa4.53□□□□□ -1.68
LIMA1-203ENST00000547825 TRAV24A0A0B4J272 114 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 LOC107984156A0A0G2JMH3 177 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 HIGD1CA8MV81 97 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 MKRN2OSH3BPM6 223 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 FOXH1O75593 365 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 IGKV1D-33P01593 117 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 IGKV1-33P01594 117 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 HLA-DRB1P01911 266 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 ORM1P02763 201 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 COX7A1P24310 79 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 CD24P25063 80 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 RND2P52198 227 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 ARF6P62330 175 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 PRB3Q04118 309 aaPredicted RBP4.53□□□□□ -1.69
LIMA1-203ENST00000547825 FOXL1Q12952 345 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 COX19Q49B96 90 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 DCAF10Q5QP82 559 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 C19orf35Q6ZS72 473 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 Q6ZWC4 215 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 ARL17AQ8IVW1 177 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 ZNF114Q8NC26 417 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 SRSF12Q8WXF0 261 aaKnown RBP4.53□□□□□ -1.69
LIMA1-203ENST00000547825 TMEM45BQ96B21 275 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 GMPPAQ96IJ6 420 aaPredicted RBP4.53□□□□□ -1.69
LIMA1-203ENST00000547825 LINC00479Q96M42 142 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 ZNF430Q9H8G1 570 aaPredicted RBP4.53□□□□□ -1.69
LIMA1-203ENST00000547825 ELOVL5Q9NYP7 299 aa4.53□□□□□ -1.69
LIMA1-203ENST00000547825 PIEZO2Q9H5I5 2752 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 IGKV3-7A0A075B6H7 116 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 SH2D7A6NKC9 451 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 CEACAM18A8MTB9 384 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 MOSP00540 346 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 TYMSP04818 313 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 CYC1P08574 325 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 FABP2P12104 132 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 PRRX1P54821 245 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 RPL30P62888 115 aaKnown RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 GNG5P63218 68 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 Q1RN00 199 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 ODF3L1Q8IXM7 274 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 C1orf174Q8IYL3 243 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 SIGLEC12Q96PQ1 595 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 KLK15Q9H2R5 256 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 PNRC2Q9NPJ4 139 aaKnown RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 THYN1Q9P016 225 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 LRBAP50851 2863 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 NPIPB13A6NJU9 1138 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 CGB1A6NKQ9 187 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 FOXI3A8MTJ6 420 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 NPIPB4C9JG80 1138 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 H7C2G1 150 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 LINC00614P0C842 121 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 C8orf88P0DMB2 117 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 RPL7P18124 248 aaKnown RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 CCL8P80075 99 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 ACTL10Q5JWF8 245 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 C10orf128Q5T292 105 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 SCGB1D4Q6XE38 83 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 TMEM178AQ8NBL3 297 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 SSC4DQ8WTU2 575 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 ADTRPQ96IZ2 230 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 CCL13Q99616 98 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 KLF13Q9Y2Y9 288 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 CHCHD2Q9Y6H1 151 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 S4R3C0 116 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 PTPN13Q12923 2485 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 TRAV5A0A0B4J249 113 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 FAM90A26D6RGX4 464 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 MPDU1O75352 247 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 PYYP10082 97 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms