RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NOXRED1Q6NXP6 359 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 TMEM14EPQ6UXP3 125 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 FAM231DQ6ZW35 169 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 TRPT1Q86TN4 253 aaKnown RBP4.42□□□□□ -1.7
CD44-236ENST00000533222 FGFRL1Q8N441 504 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 TMEM255BQ8WV15 326 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 FGF13Q92913 245 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 ZNF689Q96CS4 500 aaPredicted RBP4.42□□□□□ -1.7
CD44-236ENST00000533222 DPH3Q96FX2 82 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 APOOQ9BUR5 198 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 FBXL15Q9H469 300 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 RNF7Q9UBF6 113 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 ARL2-SNX15V9GYD0 113 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 PAPPA2Q9BXP8 1791 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 A0A0U1RQV1 116 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 SMIM28A0A1B0GU29 152 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 MDFIC2A0A1B0GVS7 189 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 RIIAD1A6NNX1 92 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 LY6LH3BQJ8 138 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 CPMP14384 443 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 GATA1P15976 413 aaPredicted RBP4.41□□□□□ -1.7
CD44-236ENST00000533222 NBL1P41271 181 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 CXCL5P42830 114 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 TRIP6Q15654 476 aaKnown RBP4.41□□□□□ -1.7
CD44-236ENST00000533222 DMRTC1Q5HYR2 192 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 C1orf100Q5SVJ3 147 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 MRPL2Q5T653 305 aaKnown RBP4.41□□□□□ -1.7
CD44-236ENST00000533222 C9orf153Q5TBE3 101 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 MFSD12Q6NUT3 480 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 RPS27LQ71UM5 84 aaKnown RBP4.41□□□□□ -1.7
CD44-236ENST00000533222 TBC1D26Q86UD7 250 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 NRACQ8N912 160 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 LMX1AQ8TE12 382 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 BADQ92934 168 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 RPL36ALQ969Q0 106 aaKnown RBP4.41□□□□□ -1.7
CD44-236ENST00000533222 TMEM230Q96A57 120 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 FAM3DQ96BQ1 224 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 MRPL20Q9BYC9 149 aaKnown RBP4.41□□□□□ -1.7
CD44-236ENST00000533222 C21orf62Q9NYP8 219 aa4.41□□□□□ -1.7
CD44-236ENST00000533222 IGLL5B9A064 214 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 ZFAND5O76080 213 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 NUDT14O95848 222 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 FGF1P05230 155 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 ACYP1P07311 99 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 COX7CP15954 63 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 IGFBP3P17936 291 aaPredicted RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 RPL35AP18077 110 aaKnown RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 MDKP21741 143 aaPredicted RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 RPL13AP40429 203 aaKnown RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 SSR4P51571 173 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 DLX1P56177 255 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 GUSBP1Q15486 140 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 PIK3CD-AS1Q5SR53 167 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 GAGE2AQ6NT46 116 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 EBLN2Q6P2I7 272 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 Q6ZSR3 168 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 SLC25A48Q6ZT89 311 aaKnown RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 PRSS41Q7RTY9 318 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 HSD11B1LQ7Z5J1 315 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 RPS19BP1Q86WX3 136 aaKnown RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 MEX3DQ86XN8 651 aaKnown RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 TDHQ8IZJ6 230 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 C10orf126Q8N4M7 172 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 NPWQ8N729 165 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 ZNF114Q8NC26 417 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 DLX4Q92988 240 aaPredicted RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 ZNF488Q96MN9 340 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 KCNIP2Q9NS61 270 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 WRAP73Q9P2S5 460 aaPredicted RBP4.4□□□□□ -1.71
CD44-236ENST00000533222 GNG13Q9P2W3 67 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 GNG12Q9UBI6 72 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 MED12LQ86YW9 2145 aa4.4□□□□□ -1.71
CD44-236ENST00000533222 CCL15-CCL14A0A0B4J2E2 113 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 GRIFINA4D1Z8 144 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 FAM90A10PA6NDY2 464 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 CRYM-AS1A6NIL9 109 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 CEBPZOSA8MTT3 80 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 J3QQQ9 107 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 SDCBPO00560 298 aaPredicted RBP4.39□□□□□ -1.71
CD44-236ENST00000533222 LMX1BO60663 402 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 VPREB1P12018 145 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 HMGA1P17096 107 aaKnown RBP4.39□□□□□ -1.71
CD44-236ENST00000533222 CBLN1P23435 193 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 RBM11P57052 281 aaKnown RBP4.39□□□□□ -1.71
CD44-236ENST00000533222 HILS1P60008 231 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 MRPS36P82909 103 aaKnown RBP4.39□□□□□ -1.71
CD44-236ENST00000533222 SLC38A11Q08AI6 406 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 ZNF718Q3SXZ3 478 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 ATP5L2Q7Z4Y8 100 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 GTSCR1Q86UQ5 136 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 HAPLN4Q86UW8 402 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 ANKRD29Q8N6D5 301 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 ZNF441Q8N8Z8 693 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 MDS2Q8NDY4 140 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 DNAJA3Q96EY1 480 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 TMEM147Q9BVK8 224 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 RTL8AQ9BWD3 113 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 FZR1Q9UM11 496 aa4.39□□□□□ -1.71
CD44-236ENST00000533222 RCL1Q9Y2P8 373 aaKnown RBP4.39□□□□□ -1.71
CD44-236ENST00000533222 OARD1Q9Y530 152 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms