RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TGP01266 2768 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 TMEM212A6NML5 194 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 SRRM5B3KS81 715 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 H3BUX3 64 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 OR2H2O95918 312 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 FCGR3AP08637 254 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 MSMO1Q15800 293 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 PRSS54Q6PEW0 395 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 SOSTQ9BQB4 213 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 MRPL16Q9NX20 251 aaKnown RBP6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 GNG12Q9UBI6 72 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 SPCS1Q9Y6A9 102 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 A0A096LNT2 108 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 TMEM189A5PLL7 270 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 K7EN84 100 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 HTR1DP28221 377 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 SAA4P35542 130 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 GNG5P63218 68 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 MEF2BQ02080 365 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 TMEM241Q24JQ0 296 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 ACOT6Q3I5F7 207 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 BTNL8Q6UX41 500 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 NHLRC2Q8NBF2 726 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 GAFA1Q96PS6 74 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 RSG1Q9BU20 258 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 MANBALQ9NQG1 85 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 VWFP04275 2813 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 RBFOX3A6NFN3 312 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 CEBPZOSA8MTT3 80 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 ZNF736B4DX44 427 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 SH2D1BO14796 132 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 HRASP01112 189 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 KRASP01116 189 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 APELAP0DMC3 54 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 CATR1Q13166 79 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 KLF17Q5JT82 389 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 LCN12Q6JVE5 192 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 SIGLEC15Q6ZMC9 328 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 OR10G9Q8NGN4 311 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 OR2K2Q8NGT1 345 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 HDHD3Q9BSH5 251 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 ESM1Q9NQ30 184 aa6.42□□□□□ -1.38
LIMCH1-219ENST00000514096 FAM231BA6NCW3 169 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 FCN3O75636 299 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 PLAC9Q5JTB6 97 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 LY6G6FQ5SQ64 297 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 FAM78BQ5VT40 261 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 STUMQ69YW2 141 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 C6orf201Q7Z4U5 140 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 NR2C2APQ86WQ0 139 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 Q9N2K0 584 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 SMPXQ9UHP9 88 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 ETV7Q9Y603 341 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 CHEK1O14757 476 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 PRSS3P35030 304 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 Q499Y3 187 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 TMEM200BQ69YZ2 307 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 SLC25A38Q96DW6 304 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 MCRIP2Q9BUT9 160 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 SSBP4Q9BWG4 385 aaPredicted RBP6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 TP73-AS1Q9UF72 201 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 TRRAPQ9Y4A5 3859 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 OR2J3O76001 311 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 DUS4LO95620 317 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 SCGB1A1P11684 91 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 F2RP25116 425 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 SEC61GP60059 68 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 DNM1P46Q6ZS02 220 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 MRPL52Q86TS9 123 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 PIP4P2Q8N4L2 257 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 ZDHHC22Q8N966 263 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 OR1L8Q8NGR8 309 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 SMIM19Q96E16 107 aa6.41□□□□□ -1.38
LIMCH1-219ENST00000514096 CENPVL3A0A0U1RRI6 287 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 KIR2DS1A0A191URI9 304 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 KBTBD11-OT1A0A1B0GTJ5 212 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 NCBP2LA6PVI3 153 aaKnown RBP6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 ARL6IP5O75915 188 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 PRB2P02812 416 aaPredicted RBP6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 CD55P08174 381 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 GNB3P16520 340 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 CRISP2P16562 243 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 PAX9P55771 341 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 ARFRP1Q13795 201 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 ACY3Q96HD9 319 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 VPREB3Q9UKI3 123 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 TNCP24821 2201 aa6.4□□□□□ -1.38
LIMCH1-219ENST00000514096 OR11H12B2RN74 326 aa6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 KNG1P01042 644 aa6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 PF4P02776 101 aa6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 ISG15P05161 165 aa6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 BLVRBP30043 206 aaPredicted RBP6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 RPL12P30050 165 aaKnown RBP6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 FGF9P31371 208 aaPredicted RBP6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 ZNF816Q0VGE8 651 aaPredicted RBP6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 RAB32Q13637 225 aa6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 PDLIM3Q53GG5 364 aaPredicted RBP6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 MOB3BQ86TA1 216 aa6.4□□□□□ -1.39
LIMCH1-219ENST00000514096 TEX29Q8N6K0 151 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms