RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 C3orf79P0CE67 100 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 C11orf71Q6IPW1 123 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 GPR146Q96CH1 333 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 VPS13CQ709C8 3753 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 MT-CO2P00403 227 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 GATA4P43694 442 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNF137PP52743 207 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 UTF1Q5T230 341 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 DTX2Q86UW9 622 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 TEP1Q99973 2627 aaKnown RBP7.09□□□□□ -1.28
LIMCH1-209ENST00000509277 PPIAL4CA0A0B4J2A2 164 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 KIR2DS1A0A191URI9 304 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 SCO2A0A1W2PP80 73 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 MMP23AO75900 390 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 PPIAL4GP0DN37 164 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 KIR2DS4P43632 304 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 KIR2DS1Q14954 304 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 TRAT1Q6PIZ9 186 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 Q6ZPA2 131 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 ZNF788Q6ZQV5 615 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 PIMREGQ9BSJ6 248 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 TMEM222Q9H0R3 208 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 CSTL1Q9H114 145 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 RNASE7Q9H1E1 156 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 PLEKHA3Q9HB20 300 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 TNFRSF19Q9NS68 423 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 IGHV3-72A0A0B4J1Y9 119 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 hADV38S2A0JD32 116 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 RBFOX2O43251 390 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 IGLC2P0DOY2 106 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 IGLC3P0DOY3 106 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 KLRD1Q13241 179 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 HAPLN4Q86UW8 402 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 SELENOHQ8IZQ5 122 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 SFRP2Q96HF1 295 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 OR2D2Q9H210 308 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 CALYQ9NYX4 217 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 FBLN5Q9UBX5 448 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 TEX15Q9BXT5 2789 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 NBPF19A0A087WUL8 3843 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 IGHV4-61A0A0C4DH41 118 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 LHBP01229 141 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 ZNF497Q6ZNH5 498 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 TAF15Q92804 592 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 ZDHHC16Q969W1 377 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 ANAPC16Q96DE5 110 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 PSMG3-AS1Q96PY0 264 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 QTRT1Q9BXR0 403 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 PLXNB1O43157 2135 aa7.08□□□□□ -1.28
LIMCH1-209ENST00000509277 PLP1P60201 277 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 SRPXP78539 464 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 SAMD13Q5VXD3 122 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 Q6ZRM9 215 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 OR10P1Q8NGE3 313 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 HES4Q9HCC6 221 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 THYN1Q9P016 225 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 H3BUT2 72 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 ENSAO43768 121 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 G6PCP35575 357 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 Q71RC1 249 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 PNKDQ8N490 385 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 OR4D5Q8NGN0 318 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 Q96MF0 132 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 ZNF714Q96N38 554 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 ZNF331Q9NQX6 463 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 F11RQ9Y624 299 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 CHEK1O14757 476 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 OR10J4P0C629 311 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 MAS1LP35410 378 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 PAFAH1B2P68402 229 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 TMEM200BQ69YZ2 307 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 LINC00596Q86U02 117 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 OR10X1Q8NGY0 326 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 C20orf144Q9BQM9 153 aa7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 HEYLQ9NQ87 328 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-209ENST00000509277 NOTCH3Q9UM47 2321 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 HIVEP2P31629 2446 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 IGKV1-6A0A0C4DH72 117 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 LINC01551Q86U37 167 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 OCC1Q8TAD7 63 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 Q8TCH9 128 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 ORAOV1Q8WV07 137 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 C18orf12Q96KH6 178 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 CLEC7AQ9BXN2 247 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A10PA6NDY2 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A18PA6NE21 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A16PA6NEW6 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A20PA6NIJ5 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A8PA6NJQ4 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A7PA6NKC0 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A22PA8MWA6 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A12PA8MX19 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A5PA8MXJ8 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A23PA8MXZ1 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 C22orf46C9J442 243 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 TGFAP01135 160 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A15PP0C7V4 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A13PP0C7W8 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A14PP0C7W9 464 aa7.06□□□□□ -1.28
LIMCH1-209ENST00000509277 FAM90A24PP0C7X0 464 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms