RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PMCHL2Q9BQD1 86 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 NPCDR1Q9BY65 106 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IQCF6A8MYZ5 107 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CORTO00230 105 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TYMSP04818 313 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 UBE2L3P68036 154 aaKnown RBP8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 HCP5Q6MZN7 132 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 C22orf34Q6ZV56 151 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SFXN3Q9BWM7 321 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 PLSCR4Q9NRQ2 329 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 S4R3C0 116 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 NPY1RP25929 384 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TIMP3P35625 211 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 RPL30P62888 115 aaKnown RBP8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MUC15Q8N387 334 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CD177Q8N6Q3 437 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SPSB4Q96A44 273 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 HARBI1Q96MB7 349 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 OR51B2Q9Y5P1 312 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SLC25A15Q9Y619 301 aa8.89□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGHV3-35A0A0C4DH35 117 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGHV2-70DA0A0C4DH43 119 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ESDP10768 282 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 COLCA1Q6ZS62 124 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A1Q86YD7 464 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GCSAMQ8N6F7 178 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SEPSECSQ9HD40 501 aaKnown RBP8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CLEC5AQ9NY25 188 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 DKK4Q9UBT3 224 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGHG3P01860 377 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CKS1BP61024 79 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 NRN1LQ496H8 165 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 LHFPL4Q7Z7J7 247 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TIMD4Q96H15 378 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 F11RQ9Y624 299 aaKnown RBP8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GPR6P46095 362 aaPredicted RBP8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 LSM10Q969L4 123 aaKnown RBP8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 NCKAP5O14513 1909 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 COX7A2P2O60397 106 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SCGB2A1O75556 95 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TMEM50AO95807 157 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TM4SF20Q53R12 229 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 Q6ZRM9 215 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 OR1B1Q8NGR6 318 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CLEC7AQ9BXN2 247 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MS4A5Q9H3V2 200 aa8.88□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CA1P00915 261 aaPredicted RBP8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGHV1-46P01743 117 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SLC25A5P05141 298 aaKnown RBP8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 OPRK1P41145 380 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 PSG9Q00887 426 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 OR10J3Q5JRS4 329 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SAXO1Q8IYX7 474 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FER1L6-AS1Q8NA97 138 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 RPEQ96AT9 228 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 PYGO2Q9BRQ0 406 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GNB1LQ9BYB4 327 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 RNASE7Q9H1E1 156 aaKnown RBP8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 A0A087X0K7 114 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A26D6RGX4 464 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 PLA2G5P39877 138 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 PDLIM4P50479 330 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TMEM97Q5BJF2 176 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 BLNKQ8WV28 456 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GOSR1O95249 250 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TNXAQ16473 311 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 LYPD6Q86Y78 171 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 COQ2Q96H96 371 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ST20Q9HBF5 79 aa8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CHTOPQ9Y3Y2 248 aaKnown RBP8.87□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ACANP16112 2415 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 H3BTX0 84 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SLC25A17O43808 307 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MPDU1O75352 247 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GATA2P23769 480 aaPredicted RBP8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GCHFRP30047 84 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TEPPQ6URK8 271 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 RAB9BQ9NP90 201 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 COL4A2P08572 1712 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 hDV102S1A0JD36 115 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ADH4P08319 380 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 HIST1H1AQ02539 215 aaPredicted RBP8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SEM1Q6ZVN7 128 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 YPEL4Q96NS1 127 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SCRT1Q9BWW7 348 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SSUH2Q9Y2M2 353 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGHV3OR16-8A0A075B7F1 116 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 K7EP13 123 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGKV3-15P01624 115 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 LMO1P25800 156 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 NMSQ5H8A3 153 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GCSAMLQ5JQS6 135 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ZNF497Q6ZNH5 498 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ZNF788Q6ZQV5 615 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 KIR3DL3Q8N743 410 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ZNF645Q8N7E2 425 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM216AQ8WUB2 273 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SGK494Q96LW2 274 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 NPVFQ9HCQ7 196 aa8.86□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 C2CD3Q4AC94 2353 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms