RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 UBE2E2Q96LR5 201 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 TXN2Q99757 166 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 SMIM3Q9BZL3 60 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 SLA2Q9H6Q3 261 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 ZNF355PQ9NSJ1 428 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 THYN1Q9P016 225 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 PAIP2BQ9ULR5 123 aaKnown RBP4.6□□□□□ -1.67
USP39-213ENST00000467885 SLC45A2Q9UMX9 530 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 WDR83OSQ9Y284 106 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 LSM4Q9Y4Z0 139 aaKnown RBP4.6□□□□□ -1.67
USP39-213ENST00000467885 S4R3C0 116 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 CUBNO60494 3623 aa4.6□□□□□ -1.67
USP39-213ENST00000467885 TET2Q6N021 2002 aaPredicted RBP4.6□□□□□ -1.67
USP39-213ENST00000467885 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.59□□□□□ -1.67
USP39-213ENST00000467885 TRBV7-1A0A0A6YYK4 115 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 A0A0G2JLM5 398 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 A0A1B0GUS0 222 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 FAM223BA6NKX1 122 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 I3L521 148 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 CYB5BO43169 146 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 CLN5O75503 358 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 IGKV1-17P01599 117 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 IGHV3-23P01764 117 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 OPRK1P41145 380 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 HBG1P69891 147 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 HBG2P69892 147 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 SLC35B1P78383 322 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 DEFA5Q01523 94 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 FOXL1Q12952 345 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 EXOSC2Q13868 293 aaKnown RBP4.59□□□□□ -1.67
USP39-213ENST00000467885 CLINT1Q14677 625 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 C15orf32Q32M92 178 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 ETFRF1Q6IPR1 90 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 CLEC19AQ6UXS0 136 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 C18orf65Q6ZTR6 163 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 FAM223AQ8IWN6 122 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 UBAC2Q8NBM4 344 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 OR4X2Q8NGF9 303 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 CXorf58Q96LI9 332 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 CCDC140Q96MF4 163 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 ATP6V0BQ99437 205 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 CHRDL1Q9BU40 450 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 PARD6GQ9BYG4 376 aaPredicted RBP4.59□□□□□ -1.67
USP39-213ENST00000467885 WDR61Q9GZS3 305 aaKnown RBP4.59□□□□□ -1.67
USP39-213ENST00000467885 ARL6Q9H0F7 186 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 GNB4Q9HAV0 340 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 C21orf62Q9NYP8 219 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 FBXL17Q9UF56 701 aa4.59□□□□□ -1.67
USP39-213ENST00000467885 SETD2Q9BYW2 2564 aaPredicted RBP4.59□□□□□ -1.68
USP39-213ENST00000467885 TRAV30A0A087WSZ9 112 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 RPS10-NUDT3A0A1W2PQS6 291 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 AGPAT2O15120 278 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 DFFBO76075 338 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 JTBO76095 146 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 SCAF4O95104 1147 aaKnown RBP4.58□□□□□ -1.68
USP39-213ENST00000467885 OR2C1O95371 312 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 CFDP00746 253 aaPredicted RBP4.58□□□□□ -1.68
USP39-213ENST00000467885 TRBV12-3P01733 135 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 IGHV3-11P01762 117 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 IGLC1P0CG04 106 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 GATA2P23769 480 aaPredicted RBP4.58□□□□□ -1.68
USP39-213ENST00000467885 RPL29P47914 159 aaKnown RBP4.58□□□□□ -1.68
USP39-213ENST00000467885 NPBWR1P48145 328 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 RND2P52198 227 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 TPPP2P59282 170 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 YPEL3P61236 119 aaPredicted RBP4.58□□□□□ -1.68
USP39-213ENST00000467885 RUNX1Q01196 453 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 ZNF90Q03938 601 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 ACSM6Q6P461 480 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 TEPPQ6URK8 271 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 BTNL8Q6UX41 500 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 PATE2Q6UY27 113 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 SLC16A13Q7RTY0 426 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 STX12Q86Y82 276 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 ACY3Q96HD9 319 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 TRGV9Q99603 122 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 MGST2Q99735 147 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 ATP5SQ99766 215 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 CITED2Q99967 270 aaPredicted RBP4.58□□□□□ -1.68
USP39-213ENST00000467885 GINS3Q9BRX5 216 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 TMEM147Q9BVK8 224 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 ZC4H2Q9NQZ6 224 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 UQCC1Q9NVA1 299 aa4.58□□□□□ -1.68
USP39-213ENST00000467885 WI2-2373I1.2A0A1W2PRP0 233 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 TCRBV4S1A1TA0A5B7 111 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 ANKRD34BA5PLL1 514 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 BCL2L11O43521 198 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 GHRHP01286 108 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 IFNA5P01569 189 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 HSPB1P04792 205 aaKnown RBP4.57□□□□□ -1.68
USP39-213ENST00000467885 RD3LP0DJH9 198 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 SPP1P10451 314 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 PSG1P11464 419 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 ATP6V0CP27449 155 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 OR10J1P30954 320 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 IFITM2Q01629 132 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 KLF5Q13887 457 aaPredicted RBP4.57□□□□□ -1.68
USP39-213ENST00000467885 TIGITQ495A1 244 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 AWAT1Q58HT5 328 aa4.57□□□□□ -1.68
USP39-213ENST00000467885 SLC51BQ86UW2 128 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms