RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 DEFA5Q01523 94 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 SCGB2A2Q13296 93 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 SPSB3Q6PJ21 355 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 SSX7Q7RTT5 188 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 MBD3L1Q8WWY6 194 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 GSX1Q9H4S2 264 aaPredicted RBP14.61□□□□□ -0.07
CLN3-204ENST00000357857 SLC25A22Q9H936 323 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 ZNF580Q9UK33 172 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 MXRA5Q9NR99 2828 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 CTXND1A0A1B0GTU2 59 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 IGLC1P0CG04 106 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 NPBWR1P48145 328 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 RHOGP84095 191 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 LCN15Q6UWW0 184 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 VN1R17PQ8TDU5 208 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 PRSS22Q9GZN4 317 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 NPFFR1Q9GZQ6 430 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 C21orf62Q9NYP8 219 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 S4R3C0 116 aa14.61□□□□□ -0.07
CLN3-204ENST00000357857 TRAV1-1A0A0B4J248 108 aa14.6□□□□□ -0.07
CLN3-204ENST00000357857 RAB19A4D1S5 217 aa14.6□□□□□ -0.07
CLN3-204ENST00000357857 SEC14L6B5MCN3 397 aa14.6□□□□□ -0.07
CLN3-204ENST00000357857 CDC34P49427 236 aaPredicted RBP14.6□□□□□ -0.07
CLN3-204ENST00000357857 COMMD1Q8N668 190 aa14.6□□□□□ -0.07
CLN3-204ENST00000357857 NECAP1Q8NC96 275 aa14.6□□□□□ -0.07
CLN3-204ENST00000357857 MS4A10Q96PG2 267 aa14.6□□□□□ -0.07
CLN3-204ENST00000357857 DUX5Q96PT3 197 aa14.6□□□□□ -0.07
CLN3-204ENST00000357857 MAP1LC3B2A6NCE7 125 aa14.59□□□□□ -0.07
CLN3-204ENST00000357857 PPIFP30405 207 aaKnown RBP14.59□□□□□ -0.07
CLN3-204ENST00000357857 EIF4E3Q8N5X7 224 aaKnown RBP14.59□□□□□ -0.07
CLN3-204ENST00000357857 RAB24Q969Q5 203 aa14.59□□□□□ -0.07
CLN3-204ENST00000357857 MAP1LC3BQ9GZQ8 125 aa14.59□□□□□ -0.07
CLN3-204ENST00000357857 A0A1W2PPV4 95 aa14.58□□□□□ -0.07
CLN3-204ENST00000357857 GNG7O60262 68 aa14.58□□□□□ -0.07
CLN3-204ENST00000357857 EIF3GO75821 320 aaKnown RBP eCLIP14.58□□□□□ -0.07
CLN3-204ENST00000357857 C15orf32Q32M92 178 aa14.58□□□□□ -0.07
CLN3-204ENST00000357857 TIGITQ495A1 244 aa14.58□□□□□ -0.07
CLN3-204ENST00000357857 Q56UQ5 140 aa14.58□□□□□ -0.07
CLN3-204ENST00000357857 TRAV30A0A087WSZ9 112 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 H3BUA1 57 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 IGHV3-23P01764 117 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 CD99P14209 185 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 FGF8P55075 233 aaPredicted RBP14.58□□□□□ -0.08
CLN3-204ENST00000357857 RHOBP62745 196 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 CCL20P78556 96 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 TMEM95Q3KNT9 176 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 TXN2Q99757 166 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 ZNF702PQ9H963 129 aa14.58□□□□□ -0.08
CLN3-204ENST00000357857 OTOGQ6ZRI0 2925 aa14.57□□□□□ -0.08
CLN3-204ENST00000357857 DNAJC9-AS1A6NH13 148 aa14.57□□□□□ -0.08
CLN3-204ENST00000357857 F8W735 103 aaPredicted RBP14.57□□□□□ -0.08
CLN3-204ENST00000357857 HMGB3O15347 200 aaKnown RBP14.57□□□□□ -0.08
CLN3-204ENST00000357857 BRI3O95415 125 aa14.57□□□□□ -0.08
CLN3-204ENST00000357857 IGKV1-17P01599 117 aa14.57□□□□□ -0.08
CLN3-204ENST00000357857 FABP1P07148 127 aa14.57□□□□□ -0.08
CLN3-204ENST00000357857 FOSL1P15407 271 aa14.57□□□□□ -0.08
CLN3-204ENST00000357857 FCGR2BP31994 310 aaPredicted RBP14.57□□□□□ -0.08
CLN3-204ENST00000357857 C19orf24Q9BVV8 132 aa14.57□□□□□ -0.08
CLN3-204ENST00000357857 FAM223BA6NKX1 122 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 TRGV3P03979 118 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 SRD5A1P18405 259 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 CFHR3Q02985 330 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 FAM223AQ8IWN6 122 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 OR1L4Q8NGR5 311 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 ZNF502Q8TBZ5 544 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 CDC42EP3Q9UKI2 254 aa14.56□□□□□ -0.08
CLN3-204ENST00000357857 PSMB11A5LHX3 300 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 COX7A2P2O60397 106 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 SCGB2A1O75556 95 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 ATP5G2Q06055 141 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 FAM78BQ5VT40 261 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 UQCC3Q6UW78 93 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 GATAD1Q8WUU5 269 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 EEF1AKMT3Q96AZ1 226 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 FAM210AQ96ND0 272 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 PFDN5Q99471 154 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 SEPSECSQ9HD40 501 aaKnown RBP14.55□□□□□ -0.08
CLN3-204ENST00000357857 DOK5Q9P104 306 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 ANK3Q12955 4377 aaKnown RBP14.55□□□□□ -0.08
CLN3-204ENST00000357857 OR5G3P0C626 314 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 PSG1P11464 419 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 S100A1P23297 94 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 TPPP2P59282 170 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 SPATA31B1PQ5VZV4 182 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 TMEM37Q8WXS4 190 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 RNF2Q99496 336 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 DNAJC4Q9NNZ3 241 aa14.55□□□□□ -0.08
CLN3-204ENST00000357857 OR2T8A6NH00 312 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 TOMM40O96008 361 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 IGLV1-40P01703 118 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 RD3LP0DJH9 198 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 PF4V1P10720 104 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 PBDC1Q9BVG4 233 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 ESM1Q9NQ30 184 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 FUT9Q9Y231 359 aa14.54□□□□□ -0.08
CLN3-204ENST00000357857 HIVEP2P31629 2446 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 TRBV7-1A0A0A6YYK4 115 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 I3L521 148 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 STAG3L2P0CL84 134 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 STAG3L3P0CL85 134 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 392.8 ms