RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TREML4Q6UXN2 200 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 CTSBP07858 339 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 C3orf36Q3SXR2 165 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 MUC15Q8N387 334 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 DDB2Q92466 427 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 TIAF1O95411 115 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 KIAA1644Q3SXP7 199 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 WNT10AQ9GZT5 417 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 UMODP07911 640 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 IL18BPO95998 194 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 SCGB1A1P11684 91 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 Q0VG73 95 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 UBTD1Q9HAC8 227 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 PLAUP00749 431 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 CDCP2Q5VXM1 449 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 SCGB3A1Q96QR1 104 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 ZNRF1Q8ND25 227 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 C20orf144Q9BQM9 153 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 FAM57AQ8TBR7 257 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 SSBP3Q9BWW4 388 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 TMEM74BQ9NUR3 256 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 MIR17HGQ75NE6 70 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 RNF125Q96EQ8 232 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 MALRD1Q5VYJ5 2156 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 RFPL3SP0C7P2 107 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 FOXC1Q12948 553 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 TMEM133Q9H2Q1 129 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 HILPDAQ9Y5L2 63 aa8.57□□□□□ -1.04
CCDC88A-202ENST00000336838 A0A1W2PRS3 328 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 STPG1Q5TH74 334 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 GPHA2Q96T91 129 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 C17orf100A8MU93 164 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 GGTLC1Q9BX51 225 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 C14orf144Q96I85 54 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 TMEM249Q2WGJ8 235 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 PPP1R27Q86WC6 154 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 GAGE1Q13065 139 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 RPRMLQ8N4K4 120 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 C10orf126Q8N4M7 172 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 OVOL2Q9BRP0 275 aa8.56□□□□□ -1.04
CCDC88A-202ENST00000336838 CEACAM4O75871 244 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 PCDH15Q96QU1 1955 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 APELAP0DMC3 54 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 IGHV1-2P23083 117 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 C21orf62-AS1Q17RA5 79 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 ATOH7Q8N100 152 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 OCC1Q8TAD7 63 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 TMEM160Q9NX00 188 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 CLPSP04118 112 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 TFF2Q03403 129 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 GGNQ86UU5 652 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 PDLIM4P50479 330 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 CYSLTR1Q9Y271 337 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 ZFP36L1Q07352 338 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 ZNF56Q15929 161 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 TMEM101Q96IK0 257 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 LEPP41159 167 aa8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 RNASE7Q9H1E1 156 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 MRPL20Q9BYC9 149 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 FOXI3A8MTJ6 420 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 CA1P00915 261 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 RPP25LQ8N5L8 163 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 F11RQ9Y624 299 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-202ENST00000336838 CXCL1P09341 107 aa8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 SSBP4Q9BWG4 385 aaPredicted RBP8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 ANKHD1Q8IWZ3 2542 aaKnown RBP8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 MNX1P50219 401 aaPredicted RBP8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 LAGE3Q14657 143 aa8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 A0A1B0GWB2 263 aa8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 MGST2Q99735 147 aa8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 IGHV3-21A0A0B4J1V1 117 aa8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 NPFFO15130 113 aa8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 FOXC2Q99958 501 aa8.54□□□□□ -1.04
CCDC88A-202ENST00000336838 PRSS8Q16651 343 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 SIGMAR1Q99720 223 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 A8MWP6 167 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 REG1AP05451 166 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 PRSS2P07478 247 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 FOXA3P55318 350 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 SPSB3Q6PJ21 355 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 DTX1Q86Y01 620 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 PATE3B3GLJ2 98 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 BSPH1Q075Z2 132 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 IGKCP01834 107 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 VWCEQ96DN2 955 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 DERL1Q9BUN8 251 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 TRAV21A0A0B4J279 112 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 TMEM238C9JI98 176 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 NTN3O00634 580 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 DLEU1O43261 78 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 GZMBP10144 247 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 LYPD6BQ8NI32 183 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 TNFRSF18Q9Y5U5 241 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 RPUSD1Q9UJJ7 312 aaKnown RBP8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 OVOL1O14753 267 aa8.53□□□□□ -1.04
CCDC88A-202ENST00000336838 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.52□□□□□ -1.04
CCDC88A-202ENST00000336838 ZNF71Q9NQZ8 489 aaPredicted RBP8.52□□□□□ -1.04
CCDC88A-202ENST00000336838 FBXL7Q9UJT9 491 aa8.52□□□□□ -1.04
CCDC88A-202ENST00000336838 IGKV1-27A0A075B6S5 117 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 IFI27P40305 119 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 192.2 ms